Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq250 165 1e-35 seq13 120 4e-22 seq203 87.8 2e-12 >seq250 Length=44145 Score = 165 bits (182), Expect = 1e-35 Identities = 559/860 (65%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 |||||| || | |||| ||||| ||| |||| || |||||||| |||||| | Sbjct 41400 AATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 41459 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGT 111433 ||| |||||||| |||| | | |||||||| ||| | | || || | Sbjct 41460 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGAT 41519 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | ||| ||| || || || ||||||||| | || | || |||||||| Sbjct 41520 TGTCTTGCG--GGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCT 41577 Query 111494 CCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | || ||| | ||||| || |||| || |||||||| | | ||| | ||| Sbjct 41578 CCC-CAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATT 41636 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TAC 111611 |||| || ||||||||||| || || || | |||||| | | || | || | | | Sbjct 41637 GGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGC 41696 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || | || || ||| ||| ||||| || || || | |||||| | | ||| |||| Sbjct 41697 ACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGCGT 41755 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 111728 |||| || || ||||| | || | |||||||| || || ||| | || | || | Sbjct 41756 GCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGT 41815 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | || || || ||||||| || || ||||| || || || || | || || || | Sbjct 41816 ATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCG 41875 Query 111789 TCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 | || || || || | ||| | |||| | | || || || ||||| || || Sbjct 41876 TGCCGCGGATGT-AGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCC 41934 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 |||||||| ||||| |||||||| | ||||| |||| || || | || ||||| Sbjct 41935 GCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCA 41994 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 |||| |||| | | |||||| |||| || || | ||| |||||||||||||| Sbjct 41995 TCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAAC 42054 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027 || || || || ||||| |||| | ||| ||||| ||||| ||||| | | Sbjct 42055 AGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCC 42114 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTT 112087 | | |||| | ||||||||| | || || ||||||| ||| | ||| || | Sbjct 42115 GCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGT 42174 Query 112088 TCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAG 112147 |||| | |||| | || || ||||||| | |||| || || || | ||||| Sbjct 42175 TCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTCTTAAAGCCAAAA 42234 Query 112148 TAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 42235 TAATCGTATTCAAAGTCTCG 42254 >seq13 Length=222908 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 46441 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATC 46382 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 46381 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46322 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 46321 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46262 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | |||| | | || |||| || || || | || |||| Sbjct 46261 GGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 46202 Query 122611 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 46201 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 46147 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| ||||| || || || || || ||||||| ||||| ||||||| Sbjct 46146 CTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 46087 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 46086 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 46027 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTC 122844 || || || || | ||| || || | | | ||| || ||||| | || ||||| || Sbjct 46026 CAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTC 45968 Query 122845 ATTGCCCATTTCGCCTTCTT 122864 | ||||| |||||||||| Sbjct 45967 AGCGCCCAACTCGCCTTCTT 45948 >seq203 Length=52029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 206 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 265 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 266 CCGGTAGGAGCTT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017005736000