Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13 159 4e-34 seq250 154 2e-32 >seq13 Length=222908 Score = 159 bits (176), Expect = 4e-34 Identities = 386/579 (67%), Gaps = 14/579 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 46441 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATC 46382 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| ||| | || | ||| |||| | | || || || Sbjct 46381 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 46322 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 46321 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 46262 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | |||| | | || || | |||||| || || | || |||| Sbjct 46261 GGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 46202 Query 129968 ATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG-----CAAAC 130021 | | | ||| | || ||| || ||| |||| | || | |||| Sbjct 46201 A----CACGCTGCTCCGGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAAGCAAAG 46148 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||| || ||||| |||||| || || ||||||| |||||| |||||| Sbjct 46147 TCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATG 46088 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | ||||| ||||| ||||||||||| |||||| Sbjct 46087 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCC 46028 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAAACCACTT 130200 ||| ||||| || | |||||||| | | ||| | ||||| | || |||| | Sbjct 46027 ACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCT 45969 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 || |||||| |||||| || | |||||||| ||||| || || | || | Sbjct 45968 CAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTG 45909 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | |||||| | || ||||||||| | || ||||| Sbjct 45908 GTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAG 45870 >seq250 Length=44145 Score = 154 bits (170), Expect = 2e-32 Identities = 487/750 (65%), Gaps = 11/750 (1%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT---AATGGTGCCCAAGTTCTTT 118808 |||||||| || | ||| ||||||||| ||| ||| ||||| | ||||| Sbjct 41362 GTGTACTCCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGC 41418 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||||| ||| || |||||||| |||||| | ||| |||||||| | Sbjct 41419 TGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATC 41478 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCC 118928 || | | |||||||| ||| | | ||| | || | ||| || || Sbjct 41479 TGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCT 41538 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || ||||||||| | || | || ||||| || ||| | ||| | || || Sbjct 41539 TCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGACCG 41598 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || |||| | || ||||| | | ||| | ||| |||| || ||||||||||| Sbjct 41599 GGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAAC 41658 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTG 119107 || || || | ||| || || |||| | || || || | || || | | || || Sbjct 41659 AGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATG 41717 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || ||||| ||||| || || | | ||| ||||||||||||||||| || | ||| Sbjct 41718 GTTCTTGCGCAAATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGC 41777 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | ||| ||||| || || ||| |||||| || || | || || ||||||| || Sbjct 41778 AAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACAC 41837 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 || ||||| || ||||| || | ||| ||| || || || || || ||| | Sbjct 41838 TCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGT 41897 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 |||| || | ||| || || ||||| || || |||||||| ||||| ||| || Sbjct 41898 AGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACA 41957 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 || | ||| || | || || || || || |||||| ||| | || | | |||||| Sbjct 41958 CTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCA 42017 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| || | || |||||||| ||||| || || || || |||||| |||| Sbjct 42018 CGAAGACAATTGTGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAA 42077 Query 119465 CATACCTTGGGACATCTTGTCGTAGGTCTC 119494 | ||| ||||| ||||| ||||| Sbjct 42078 GAATTTTTGCGACATGAGTTCGTAAGTCTC 42107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420434859600