Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq250 192 7e-44 seq13 129 7e-25 >seq250 Length=44145 Score = 192 bits (212), Expect = 7e-44 Identities = 484/727 (67%), Gaps = 9/727 (1%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGC 104198 |||||| || | | ||||||||| | || || || |||| | ||||||| || Sbjct 42253 GAGACTTTGAATACGATTATTTTGGCTTTAAGACACTGGAGAGGGGCTATCTCTTCCGTG 42194 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | || || ||||| || ||| | ||| ||||||||||||| | || || | Sbjct 42193 TCCACGGCAAAGTGGTGGAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCC 42134 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | | |||| | | | | ||||| ||||| ||||| ||| | |||| Sbjct 42133 ACAAGACGAACATCAAGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCA 42074 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCT 104378 ||||| || || || || |||||||||||||| ||| | || ||| |||| |||| Sbjct 42073 CCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCGTGCT 42014 Query 104379 TCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 || | | |||| |||| ||||| || | || || |||| ||||| | |||||| Sbjct 42013 TCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTG 41954 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 || ||||| |||||||| || || ||||| || || || | | |||| | || Sbjct 41953 CGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTA 41894 Query 104499 A-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 104557 | | || || || || || || || || | || || || || ||||| || || Sbjct 41893 ACAGCT-ACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTG 41835 Query 104558 TTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCA 104614 ||||||| || || || || || | || | ||| || || |||||||| | || Sbjct 41834 TTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCG 41775 Query 104615 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 104674 | ||||| || || |||||||| ||| | | |||||| | || ||||| ||||| Sbjct 41774 ATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCAT 41715 Query 104675 GGTGACGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 ||| |||| | || | |||| || || | |||| ||||| ||| | || ||||| || Sbjct 41714 GGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGTT 41656 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| | || |||| | |||||| ||| | | || ||||| || |||| || || Sbjct 41655 CATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGG 41596 Query 104794 TCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAG 104852 ||| | ||| ||| | ||| |||||||| || | || | ||||||||| |||| Sbjct 41595 TCTATACGAGTGCTG-GGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAG 41537 Query 104853 GTCGGGC 104859 | || || Sbjct 41536 GCCGCGC 41530 >seq13 Length=222908 Score = 129 bits (142), Expect = 7e-25 Identities = 201/285 (71%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | || || ||| | || || | || || | Sbjct 45870 CTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAG 45929 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 || | |||||| | ||||| ||| |||||| ||| |||| || | ||||| Sbjct 45930 ACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACCCGAAAGTG 45989 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | | | | ||||| || | ||||| || ||| ||||| ||||||||||| || Sbjct 45990 TCCT-CATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGG 46048 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||||| ||| | || | |||||||||||||| ||||||||||| ||||| ||||||| Sbjct 46049 CTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTC 46108 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||| ||| |||||| || || | ||| ||| ||||| Sbjct 46109 CAACGAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGC 46153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246874648400