Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1501 134 4e-26 seq992 95.1 4e-14 seq1609 91.5 4e-13 seq6 91.5 4e-13 seq1786 89.7 2e-12 >seq1501 Length=1609 Score = 134 bits (148), Expect = 4e-26 Identities = 895/1429 (63%), Gaps = 16/1429 (1%) Strand=Plus/Minus Query 349220 ACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGAT 349279 || || || || || || | || ||||| ||||| ||||| || || || || || ||| Sbjct 1609 ACGACATACTCGTGCGTGGGCGTATGGCAGAATGACCGTGTGGAGATCATCGCCAACGAT 1550 Query 349280 CAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGT 349339 ||||||||| | || || || || |||||||| || || || || |||||| |||| || Sbjct 1549 CAAGGTAACCGTACGACCCCTTCGTACGTTGCCTTCACGGACACGGAGCGTCTGATCGGA 1490 Query 349340 GATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGA 349399 || | || || || || | || ||| | | || ||||| || || || ||||| Sbjct 1489 GACGCCGCCAAGAACCAGGTGGCCATGAATGCGCACAACACGGTGTTCGACGCCAAGCGT 1430 Query 349400 CTTATTGGTAGAAGTTTTTCTGA-CAAATCTACACAATCTGATCTAAAACATTTTCCTTT 349458 || || ||| | | || || || | ||| || || || | || || | || || Sbjct 1429 CTGATCGGTCGCAAGTTCTCGGACCCGATC-GTGCAGTCGGACATCAAGCACTGGCCGTT 1371 Query 349459 TA--CTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGA- 349515 | |||| || | | |||||| || || || ||| | | || || || Sbjct 1370 CAAGCTGTCGT--CGGGTGCCGGTGACAAGCCCCAGATCACGGTGCAGTTCAAGGGCGAG 1313 Query 349516 ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAAT 349575 | || || || ||| || || || || || ||||| | | || ||| || | Sbjct 1312 TCGAAGAC-GTTCCAACCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGCGCGAGGT 1254 Query 349576 TGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTT 349635 ||||| || | | || | || | | || || || || || || ||||| || Sbjct 1253 GGCTGAGGCGTTCATCGGCAAGGAGGTGAAGAACGCCGTCATCACGGTGCCGGCCTACTT 1194 Query 349636 TAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCT 349695 || || | |||||| || || || |||||||| |||||| || | || || || Sbjct 1193 CAACGACTCGCAGCGTCAGGCCACCAAGGATGCTGGTGCCATTGCCGGCATGAACGTGCT 1134 Query 349696 AAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGA 349755 | || || || || || || ||||| || ||||| || || || || || | | | | Sbjct 1133 GCGTATCATCAACGAGCCGACGGCTGCTGCGATTGCGTACGGTCTGGACAAGAAGGGCGG 1074 Query 349756 CCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT 349815 | || || | || || || || | ||||| ||||| || ||||| || || || Sbjct 1073 C---GAGCGCAACGTGCTGATCTTCGACCTGGGTGGCGGTACCTTCGATGTGTCGCTGCT 1017 Query 349816 AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 | | || |||||||| || ||||| || || ||||| ||||| || || | ||||| Sbjct 1016 GAGCATCGAGGAGGGAATCTTCGAAGTGAAGGCGACTGCGGGTGACACGCACTTGGGTGG 957 Query 349876 AGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TA 349934 || || || ||||| ||||| || || || || || || ||||| ||||| Sbjct 956 TGAGGACTTCGATAACCGTCTGGTGGACCACTTCGTGTCGGAGTTCAAGCG-CAAGCACC 898 Query 349935 AAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTG 349994 | || || || || | | ||| ||||||| || | ||||| || || || | Sbjct 897 GCAAGGACATCACGGAGAACCAGCGTGCACTGCGTCGTCTGCGGACTGCCTGCGAGCGCG 838 Query 349995 CTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATG 350054 | |||||| | | || || | |||| | | || || || || || || || | Sbjct 837 CCAAGCGTACGCTGTCGTCGTCCGCCCAGGCTTACATCGAGATCGACTCGCTGTTCGACG 778 Query 350055 GCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTT 350114 | | || ||| || | || || |||||||| || || || | || || | Sbjct 777 GTATCGACTTCAACTCGACCATCACCCGTGCTCGTTTCGAGGACATGTGCGGCGACTACT 718 Query 350115 TTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATC 350174 | | || ||||| || ||||| || || | || || || |||| || | | Sbjct 717 TCCGTAAGACGATGGAGCCCGTGGAGAAGGTGCTGCGCGACGCGAAGCTGTCGAAGAGCC 658 Query 350175 AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTAC 350234 || | | || || || | || || ||||| || ||||| || || || || ||| | | Sbjct 657 AGGTGCACGAGGTGGTGCTTGTCGGCGGTTCCACGCGTATCCCGAAGGTGCAGCAGCTTC 598 Query 350235 TATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTG 350294 | || || || || || ||||| || || | | || || || || || || ||||| | Sbjct 597 TGTCGGACTTCTTCAACGGCAAGGAGCCGTGCAAGTCGATCAACCCGGACGAGGCTGTGG 538 Query 350295 CATATGGTGCTGCTGTTCAGGCATCTATT-TTATCTGGAAATAAGAGTTCTAAAA--TTG 350351 | | || || | || ||||| | ||| | | | | || | || | || | Sbjct 537 CGTTCGGCGCCACGGTGCAGGCGGCCATTCTGAGCGGCAACGATTCGTCGGAGAAGCTGC 478 Query 350352 ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAG 350411 | ||||| | || || ||||| || || || |||||||| | || || | |||| | Sbjct 477 AGGATCTGCTGCTGCTGGATGTGACGCCTCTGTCGCTTGGTCTGGAGACCGCGGGTGGTG 418 Query 350412 TAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTT 350471 | ||||| || || | | || | || || || || || ||||| || || || | Sbjct 417 TGATGACGACGCTGATCGCGCGTAACACGACGGTGCCCACGAAGAAGTCGCAGACGTTCT 358 Query 350472 CTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTC 350531 | || | || || || ||||| | || || || || || || ||||| || | Sbjct 357 CGACGTACGCGGACAACCAGCCTGGTGTGCTGATCCAGGTGTTCGAGGGTGAGCGCACGA 298 Query 350532 GCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTA 350591 ||| || || || || || | || | ||| || ||||| |||||| Sbjct 297 TGACTCGTGACAACAACCTGCTGGGCAAGTTCAACCTGGACAGCATCCCACCGATGCCTC 238 Query 350592 GAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 | || || || ||||| || || | ||||| |||||| | || ||||| Sbjct 237 GTGGTGTCCCCCAGATCGACGTGACGTTCGACATTGATGCCAACGGTAT 189 >seq992 Length=3988 Score = 95.1 bits (104), Expect = 4e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| ||||| ||||| || Sbjct 142 GGTATCGATCTCGGTACGACATACTCGTGCGTGGGCGTATGGCAGAATGACCGTGTGGAG 83 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || |||||||||||| | || || || || |||||||| || || || || Sbjct 82 ATCATCGCCAACGATCAAGGTAACCGTACGACCCCTTCGTACGTTGCCTTCACGGACACG 23 Query 349325 GAGCGTATGATTGGTGA 349341 |||||| |||| || || Sbjct 22 GAGCGTCTGATCGGAGA 6 >seq1609 Length=1400 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1140 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1199 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1200 CCCTGCTTCTCCA 1212 >seq6 Length=277710 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 2064 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 2005 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 2004 CCCTGCTTCTCCA 1992 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 2864 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 2805 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 2804 CCCTGCTTCTCCA 2792 >seq1786 Length=1162 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 982 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 1041 Query 74548 TCGGGCA 74554 ||||||| Sbjct 1042 TCGGGCA 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515217318883730