Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq250 219 5e-52 seq89 143 3e-29 seq117 118 1e-21 seq252 87.8 2e-12 >seq250 Length=44145 Score = 219 bits (242), Expect = 5e-52 Identities = 532/788 (68%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA-CACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || |||||| ||||| | || | | | |||||| ||| Sbjct 42157 TCATGCGCGTGGCTCTAGGCATCCACAA-GACGAACATCAAGGCGGCACTTGAGACTTAC 42099 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||| | ||| || |||||||| || || |||||||| |||||||| Sbjct 42098 GAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACT 42039 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || |||| |||||| || |||| ||| |||||||||| || || ||| Sbjct 42038 CCACGTCCACAATTGTCTTCGTGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGC 41979 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || ||||||| ||||||||||||| |||| || || || ||| Sbjct 41978 ATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATC 41919 Query 53432 -CACTGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG- 53486 ||| | ||| |||| | | ||| || || ||| || ||||||||| ||| Sbjct 41918 AGTATGCAC-AACATCCGAGCTACTAACAGC-TAC--ATCCGCGGCACGAACGGC-TCGT 41864 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||| | || ||||| || || || ||| | ||||| || ||||| |||||| Sbjct 41863 CCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACGGCACGATACGTGGACCAGG 41804 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || || |||||||| || || || || || || || ||||||||||| || | Sbjct 41803 GTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAACCGTGGCACGCTGATGTGT 41744 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-CGTGACC 53663 | ||||| | || |||| ||| || ||| || ||| ||| | ||| |||||| Sbjct 41743 TTGAGTTCTTGGATTTGCGCAAGAACCATGGTAAC---GAGCTGCACCGTGCACGTGACT 41687 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 |||| ||||||||| | ||||| || |||||| | |||||| | | ||| Sbjct 41686 TGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGAAGCGTGTGGAGGCCAATGGCAAGT 41627 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || || | || || |||||| ||||| || | | ||| || || |||||||| Sbjct 41626 GGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTATACGAGTG-CTGGGGAGAGGAGTT- 41569 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| ||| | || ||||| | | |||||| | |||| |||| || Sbjct 41568 --CGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGCCCGCAAGACAATCAATGCT 41511 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || || || | ||| | |||||||| ||| | |||| Sbjct 41510 CAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGACGGGCGTGCCTTTCATGCTG 41451 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| | | |||| ||| ||||||| ||||| ||||| || |||||| Sbjct 41450 TACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACGATTCGCTCGAGC 41391 Query 53960 AACTTATG 53967 ||||| || Sbjct 41390 AACTTGTG 41383 Score = 168 bits (186), Expect = 7e-37 Identities = 532/812 (66%), Gaps = 33/812 (4%) Strand=Plus/Minus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||||||| |||||||||| || |||||||| | | ||| ||||| Sbjct 41252 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAAT 41193 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || ||||| || | | || ||||| |||||| | || ||| ||||| Sbjct 41192 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 41133 Query 55253 ATGCTCGGATTGCCCTTCGAC--TCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || | ||||| || | | || || || | ||| || | |||||| Sbjct 41132 CTCATGGACTTTGCGTTCGAGAGTCCGGAG--GCGCGTGAGCTCAACAAGAATATCTTCG 41075 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || | |||||||| || | | ||| |||| | ||||| | | ||| | Sbjct 41074 AGAC-CATCTACTACGCTTCTATGGAGACGTCGATGGAACTGGCCACGGAATTGGGCCCG 41016 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGC 55429 |||||||| |||| | |||||| || |||||| | ||||||||||| | |||| | Sbjct 41015 TACGAGACTTTCCAGGGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGAC 40956 Query 55430 ---AAGTCTGACCCCA---TGTTTGACAAGT------TGAAGCATGACATTCACTTGTGG 55477 | | || | || ||| ||| | | ||| | | | | | Sbjct 40955 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40896 Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||| || || || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 40895 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 40836 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || || |||||| | |||| |||| ||| ||||||| ||| ||||| || || Sbjct 40835 GGTAATAACGAGTCTATCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCG 40776 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| ||| | |||||| |||| | || || ||| || | |||| Sbjct 40775 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 40716 Query 55658 AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG- 55714 || || | | | ||| ||| | |||| || || || |||||| || || Sbjct 40715 GCTCCTGAGGTGCGTAACCAGATCTTGAATG--ACGGCGGTTCGGTGCAGAATGTG-AGC 40659 Query 55715 ---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 ||||| | ||||||||| ||| ||||||||||||||| |||||| | Sbjct 40658 TCCATTCCGAACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG--T 40601 Query 55772 CTGATT---GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | |||| ||| || ||| ||||||||||| |||||| ||| ||||| |||||| Sbjct 40600 C-GATTCTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAAC 40542 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 40541 ATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAG 40482 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| ||||||||||| |||||||| |||| Sbjct 40481 AAGGGGCTCAAGACGGGCATGTACTACATGCG 40450 >seq89 Length=92099 Score = 143 bits (158), Expect = 3e-29 Identities = 249/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || |||||||| || | ||| || | |||||| || Sbjct 26104 ATCCCGTGCCGATACCATCACTGCCGTTGACAAGCACCATAGGGATAATAGGAATATACC 26045 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 |||||||||| | | |||||||| || || || |||| |||| ||||| | Sbjct 26044 ACTCCGGCTCAATCGACTGACCGTCTTCGTCCAGATAGTTCAGAACGTCGTTGTCTAGTG 25985 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || || || | | || ||||| ||||| || || || |||| Sbjct 25984 GGTCGTAGATTCGGCGCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGAACTAGCCG 25925 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| ||||| || ||||| || ||| || || |||| | | Sbjct 25924 CATCCTTACCACCCATCAGCCTTGTACCAAATTGACCAATTGGGGATAGAAGGTGAACAT 25865 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| || ||||||| ||| |||| |||||| || |||||||| || ||| |||| Sbjct 25864 TGTTGCTTCCAACGAAATCCTGCGCCATATTCACGATACAGCCCTGCAAACCCGCCTCAC 25805 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||||||| || | ||||| | || ||||| ||||| || || ||||| | |||| Sbjct 25804 CGTGGTGATATGCAGAGTGCTCAGAGACATATCCAGCCAATTGTGCTACCTTGAGCTCCG 25745 Query 152234 TC 152235 || Sbjct 25744 TC 25743 >seq117 Length=76008 Score = 118 bits (130), Expect = 1e-21 Identities = 300/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||||||||| ||||||| || | |||||| | || |||||| ||| | Sbjct 14494 CCCGTTCCGATACCCTCTGCGCCATTCACGAGCAGCATCGGGATGATAGGAACATAGTGC 14435 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||||| || | | ||| ||||| | |||| | || ||||| || |||| Sbjct 14434 ACAGGCTCAACAGGGAAACCATCGTCGTCGGCGTAGCGCAACAACGCATCATCCTCCTCG 14375 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAA--TGTAACGAGAGCTTGC 117327 | ||| | || || | || | |||| ||| ||||||||| || || Sbjct 14374 GG--GAACAGCAGACGAGTGTAC--TTCTGGAGCAGTGTAAAGATGTAACGAGGACTAGC 14319 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| || | || || || || || || || | || | | || Sbjct 14318 GGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTGGCCTGATGGGTACAGTAAGGGAAG 14259 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 || |||| || ||| ||| || |||| ||| |||||||| || | ||||| Sbjct 14258 ATTATTGGAACCGACATAGTCCTGCGCCATGTTAACAATCGTCGAGTGCAACGAAGCCTC 14199 Query 117448 ACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 || |||||||| ||||| ||||| | || ||||||||| ||||| |||||||| | | Sbjct 14198 GCCGTGGTGATAGGCCGTGTGCTCACTGCA-GTAGCCCGCAAGCTGGGCCACCTTGACCT 14140 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | ||| || || ||| ||||| ||||| | ||||||||||| ||| |||| Sbjct 14139 CACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGAACCTTGCGCTGCGAAATCTTGAGAC 14080 Query 117567 CATCCGCCACGTGA-GGGATCGAACGC 117592 |||| |||| ||| || | ||| ||| Sbjct 14079 CATCAACCAC-TGACGGTAGCGACCGC 14054 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| ||| | || || |||||||| Sbjct 14341 GTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTGG 14282 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || | | || || |||| || || | | ||| |||| || ||| Sbjct 14281 CCTGATGGGTACAGTAAGGGAAGATTATTGGAACCGACATAGTCCTGCGCCATGTTAACA 14222 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||| |||| || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 14221 ATCGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCAGTAGCCC 14162 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| | || ||| || || ||| || || || || | ||| Sbjct 14161 GCAAGCTGGGCCACCTTGACCTCACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGAACC 14102 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGC 152316 |||||||| || || | ||| || ||||| ||| || | ||| ||| Sbjct 14101 TTGCGCTGCGAAATCTTGAGACCATCAACCAC-TGACGGTAGCGACCGC 14054 >seq252 Length=43026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 124950 CCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGAC 125009 |||| |||||||||| ||| || ||||||| | | ||||| |||| ||||||||||||| Sbjct 36010 CCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAATGACACTTTCACATGGGAC 36069 Query 125010 TGGGCACCTAGGTTGTACACCTC 125032 ||||| |||||||||||||| Sbjct 36070 ATTGCACCCAGGTTGTACACCTC 36092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202935218000