Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq250 315 8e-81 seq117 168 8e-37 seq625 141 1e-28 seq468 136 5e-27 seq328 93.3 5e-14 seq68 82.4 9e-11 >seq250 Length=44145 Score = 315 bits (348), Expect = 8e-81 Identities = 1134/1750 (65%), Gaps = 58/1750 (3%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| ||||||||||| |||| | |||||| Sbjct 40443 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT 40502 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| ||| || | | ||| |||||||| |||||| |||||| Sbjct 40503 CGATGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACA 40562 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||| | || |||||||| || | || || | ||| ||||| || || ||||| || Sbjct 40563 GATGTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACAC 40622 Query 80214 -----TGTACGATACACCTT-ACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACT 80264 ||||| | | |||| ||| | || |||||| || ||| ||||| Sbjct 40623 CGTCTTGTAC--TTCTCCTTGACGTGGTTC----GGAATGGAGCTCACATTCTGCACCGA 40676 Query 80265 GCCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 || ||||| || | || || || || |||| | ||| ||||| |||| ||| Sbjct 40677 ACCGCCGTCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAG 40736 Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384 || |||| |||| |||||| | ||| |||||||||||| || ||| || || Sbjct 40737 CTCATTCATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTA 40796 Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444 || ||| | ||| | || || | | |||||| || ||||||||||| ||||| ||| Sbjct 40797 CATGTTGGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGC 40856 Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA------TATC 80498 |||||||||||| |||||| || ||||| ||||||||| ||||||| | || Sbjct 40857 CGTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCG---TTCTTGACCACCTTCTC 40913 Query 80499 CT--CGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 || ||||| | | || | | | || || ||||| ||||||| ||| || Sbjct 40914 CTTAAGCGCAGCCCAGTCCCACAGACCGGAGGAAGGC-GTGACGTCCCACATATCGAACT 40972 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCT 80611 | ||||| |||| || || || ||| ||| ||||||||||||||| |||| Sbjct 40973 GGAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCG--- 41029 Query 80612 TGGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 ||||||| || ||| ||||||| | |||| || ||| ||| |||| || Sbjct 41030 TGGCCAGTTCCATCGACGTCTCCATA---GAAGCGTAGTAGATGGTCTCGAAGATATTCT 41086 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 |||| | | ||||||| || ||||||| ||| |||| | ||||| |||| | Sbjct 41087 TGTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCG 41146 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG-ATCGCTCGGCCTCC 80787 | |||||||| || || || | | || ||||| ||| |||| | || || ||||| Sbjct 41147 CAAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGC-GAGCCTCA 41205 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 || ||||| |||| |||||||| ||||||||||||||| | ||| Sbjct 41206 ATAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACG 41265 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 || |||| || |||| ||| ||| | || || || || || || | Sbjct 41266 ACCTCATACAGCTTCTTGTAGTTGAACACGGCGTTCTCAACGAACTTGGGGAGCGCCACG 41325 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||||| |||||||||||||| || || | || |||| | | ||| |||| Sbjct 41326 GACGCCAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCAC 41385 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || || ||| || || ||||| | |||||| |||||| |||| |||||| Sbjct 41386 AAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCC 41445 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||| | || || ||||| | ||| | | || || ||| ||| | | Sbjct 41446 TTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGC 41505 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTC 81146 | | || |||| ||||||| |||||| | | ||||| | | ||| || Sbjct 41506 TGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTC 41565 Query 81147 GTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 ||||||| | || || || | || |||||| || || | || Sbjct 41566 -TCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACT 41624 Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 ||| | | | | ||| ||| ||||||||| || || | ||| || || ||| Sbjct 41625 CCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAA 41684 Query 81267 CAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 || ||| || ||| || | ||| | ||| ||||| |||||| || | || || | Sbjct 41685 CAAGTCACGTGCA-CGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAA 41743 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382 | || || ||||| || |||||||| | || | || |||||||| || |||| Sbjct 41744 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 41803 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442 |||||| ||||| || || || ||||||| || |||| ||| |||||||| || | | Sbjct 41804 CCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 41863 Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAG 81500 || |||||||| || ||| | | | | || || | ||| || | Sbjct 41864 ACGAGCCGTTCGTGCCGCGGAT--GTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT 41921 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 || ||||| || | |||||| || || |||||| | |||| || |||||||| || Sbjct 41922 GCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCC 41981 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 || || || | | |||| | | |||||| || |||| || || | | | Sbjct 41982 TTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGT 42041 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || ||||||||||| || ||||| ||||| |||| | | ||||| || || || Sbjct 42042 ACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTA 42101 Query 81681 GGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 || || || ||| | || ||||| ||| || || | ||| || ||||| | || Sbjct 42102 AGTCTCAAGTGCCGCCTTGATGTTCGTC-TTGTGGATGCCTAGAGCCACGCGCATGATCA 42160 Query 81740 TGTACTGGGG 81749 | | |||||| Sbjct 42161 TCTGCTGGGG 42170 >seq117 Length=76008 Score = 168 bits (186), Expect = 8e-37 Identities = 203/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || |||||| ||| ||||||||||| | || || ||||| ||| || Sbjct 14070 GTGGTTGATGGTCTCAAGATTTCGCAGCGCAAGGTTCTCTATGCATGCCTGAAGCGCAAG 14129 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 || || |||| | |||||||| ||||| |||||||| ||| ||||| ||||||| Sbjct 14130 CTTACGCGTGAGGTCAAGGTGGCCCAGCTTGCGGGCTAC--TGCAGTGAGCACACGGCCT 14187 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 |||||||||||||||| ||| | || || ||||| ||| | || ||| ||| ||||| Sbjct 14188 ATCACCACGGCGAGGCTTCGTTGCACTCGACGATTGTTAACATGGCGCAGGACTATGTCG 14247 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | ||||| || |||||| | ||||| || |||||||| ||||| | || | Sbjct 14248 GTTCCAATAATCTTCCCTTACTGTACCCATCAGGCCAGTTTGGCACCCGATTACAAGGAG 14307 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || || | ||||||||||| || Sbjct 14308 GCAAGGATGCCGCTAGTCCTCGTTACATCTTTAC 14341 >seq625 Length=11448 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 2723 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 2664 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||||||||| || ||| Sbjct 2663 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGAC 2604 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 2603 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTAC 2544 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 2543 AACATCCAGAAGG 2531 >seq468 Length=19833 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || || || ||| | Sbjct 15625 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 15566 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 15565 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 15506 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 15505 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 15447 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || ||||| || || | |||||||| || ||| Sbjct 15446 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGGA 15398 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || || || ||| | Sbjct 19479 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 19538 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 19539 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 19598 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 19599 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 19657 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | || || || ||||| Sbjct 19658 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGG 19705 >seq328 Length=32478 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || |||||||| || || || || |||||||||||||| || || || || ||||| || Sbjct 3 CAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG 62 Query 27556 GAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||| | ||| || || ||| ||||| || |||| ||||| || || ||||| || || Sbjct 63 GAGGACGGTCGCACGCTGAGC-GACTACAACATCCAGAAGGAGTCTACACTTCACCTGGT 121 Query 27615 CTTGCGTCTTCGCGGTGG 27632 | |||||||| || || Sbjct 122 GCTTCGTCTTCGTGGCGG 139 >seq68 Length=108243 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 97412 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 97471 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || |||| ||||| ||| || || || || ||||||| || Sbjct 97472 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 97531 Query 27628 GGTGG 27632 ||||| Sbjct 97532 GGTGG 97536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296783839200