Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq80 179 3e-40 >seq80 Length=102449 Score = 179 bits (198), Expect = 3e-40 Identities = 457/679 (67%), Gaps = 25/679 (4%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | |||||| ||||| || || || | ||||| Sbjct 13360 AGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGG 13419 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 29982 | ||| || || |||| | || | || || |||| || || ||| || || | || Sbjct 13420 ATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 13478 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||||| || || || ||||| |||||||| |||| | |||||| | ||| || Sbjct 13479 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGGCA 13538 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||| | ||| || || ||||||||||||||| | ||||||||| || || ||||| Sbjct 13539 CGACAACTCGCCATCCGCCACGTAAAACTGACAAAACATGTGGCACGGCGGCAGCGCCAT 13598 Query 30103 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGG 30157 | || || || || ||||| || ||| | || || | ||| || | Sbjct 13599 ----CTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAGT 13654 Query 30158 TTGTTC-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 30214 | || | | | || || ||| | || || |||||||| ||| || | |||| Sbjct 13655 TCGTGCGCAGTTTGTGGATCAC----CTCAGCAAGTTGATCCACTCCCTGTCCAGTGTAG 13710 Query 30215 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30274 ||||| ||| |||||||||| ||||| || || | ||||||||| || ||||| ||| Sbjct 13711 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGT 13770 Query 30275 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30334 ||||| ||||| ||||||| || | || | |||||||| | |||| || || Sbjct 13771 CCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCA 13830 Query 30335 TTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394 ||| | |||||||| | | |||||| | | | || | || ||| || Sbjct 13831 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGGGCACTCGTATCCCCACTA 13890 Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAG 30453 | ||||||||||| |||||| | || | |||| || || |||| ||||| || | Sbjct 13891 ATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACTTTCTTAGTCGTCAGCAAT 13950 Query 30454 GGGAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 30510 ||||| | | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 13951 GGGAACACATTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 14008 Query 30511 C-GTGCCCGTCCTGTCTCC 30528 | || || |||| |||||| Sbjct 14009 CTGTTCCTGTCCGGTCTCC 14027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300941855720