Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq563 188 2e-42 seq468 145 2e-29 seq827 125 2e-23 seq625 120 7e-22 seq328 93.3 1e-13 seq250 87.8 4e-12 >seq563 Length=14408 Score = 188 bits (208), Expect = 2e-42 Identities = 214/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| ||| ||| |||||||||||| | ||||| | |||||| | | Sbjct 7620 ACTTTATATTTAATTTTTAGTGCTTTTTCTGGTATTGTTGGTACAACATTTTCACTTTTA 7679 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || | | |||||| | || ||| |||||| || | |||||| ||| | || Sbjct 7680 ATTCGTATGGAATTATCACAACCAGGTAATCAAATTTTAATGGGTAATCATCAATTATAT 7739 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || || ||| |||| || ||||| ||| ||||| | || ||| | |||||||| | | | Sbjct 7740 AATGTAATTGTTACTGCACATGCTTTTATTATGGTATTTTTTCTAGTTATGCCTGCTTTA 7799 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || || || || ||||| || ||||||||||||| ||||||||||||||||||||| Sbjct 7800 ATTGGTGGATTTGGTAATTGGTTTATTCCTTTAATGATCGGTGCTCCTGATATGGCTTTT 7859 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | | || |||||||||||||| ||| |||| || || ||||| Sbjct 7860 CCTCGTATGAATAATATAAGTTTTTGGTTATTACCACCATCATTATT 7906 Score = 118 bits (130), Expect = 3e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 8125 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 8066 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| |||||||| || || | | |||||||||||| || |||||||| Sbjct 8065 TTAATAGCACCTAATAGAGAAGACATTCCAGATAAATGTAAACTAAAAATAGCTAAATCT 8006 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| || |||| | || ||| || || |||||||| || ||| Sbjct 8005 ACAGAAGGTCCTGAGTGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCG 7949 Query 371542 GT 371543 || Sbjct 7948 GT 7947 Score = 104 bits (114), Expect = 6e-17 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| || || Sbjct 8303 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCAGA 8244 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 8243 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 8200 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 3281 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 3340 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 3341 GTAACATGATGTATAGGGTCTGACAC 3366 >seq468 Length=19833 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 15404 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 15463 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 15464 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 15523 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||||||||| ||||| | ||| || | |||||||| | Sbjct 15524 TTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAG 15583 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||| |||||||| |||| Sbjct 15584 CGTGATAGTCTTGCCAGTCA 15603 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 19690 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 19631 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 19630 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 19571 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 19570 TGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTC 19511 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 19510 TTGCCAGTCA 19501 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| || ||||||||||||||||| || ||||||||| ||||| Sbjct 19831 CGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATC 19772 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 | ||| || | |||||||| | |||||| |||||||| |||| Sbjct 19771 GAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCA 19729 >seq827 Length=6135 Score = 125 bits (138), Expect = 2e-23 Identities = 96/113 (85%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 5030 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCG 5089 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||| ||||| | || ||||| ||||||| || |||||||| ||||||| Sbjct 5090 GCTTGAGTTTCAATAATAGGTAGTGCTGTTAAAGAACCACCACC--AATTTTT 5140 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 4087 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 4028 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 4027 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 3969 Query 6865 GTAAT 6869 | ||| Sbjct 3968 GCAAT 3964 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||||| | || || || |||||||||| | |||| |||||||||||||||||||| || Sbjct 5355 CAATACTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGACAA 5296 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| ||||| | || ||||||||| ||||||| Sbjct 5295 CATGCTGTAATCTTTTATGATGATTTATCTAAACAA 5260 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 3400 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 3459 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 3460 GACTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 3519 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 3520 AACGCGTTAGCT 3531 >seq625 Length=11448 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 2533 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2592 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| ||||| || ||||| ||| || Sbjct 2593 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2652 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| |||| || | |||||||| | |||||| ||||||||||||| Sbjct 2653 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCA 2698 >seq328 Length=32478 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 134 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 75 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 74 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 15 Query 225612 TTCCTTGTCTTGGA 225625 |||||||||||||| Sbjct 14 TTCCTTGTCTTGGA 1 >seq250 Length=44145 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 193502 CTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGC 193561 ||||||| ||| || | |||||| ||||| | ||||| |||| |||| ||| Sbjct 41418 CTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAAT 41477 Query 193562 TTGAGCGACGAGAAT-GTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTC 193620 || ||| | ||||| | || ||| || | |||||| || | |||| | | ||| | Sbjct 41478 CTGCGCGTCCAGAATAGCGAA-CCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGC 41536 Query 193621 CTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGAC 193680 |||| | ||||||||| || |||| ||| || || | ||| || |||| |||| Sbjct 41537 CTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGAC 41596 Query 193681 CGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGA 193740 ||||||| || || || || || | |||||| | |||| ||||| | |||||||| Sbjct 41597 CGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGA 41656 Query 193741 AGAGGTC 193747 | || || Sbjct 41657 ACAGATC 41663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192502016525540