Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq80 143 2e-29 >seq80 Length=102449 Score = 143 bits (158), Expect = 2e-29 Identities = 436/666 (65%), Gaps = 23/666 (3%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| ||||| ||||| ||||| || | |||||| ||| || || Sbjct 13372 AGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGGATAAATTCGCCA 13431 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29766 |||| | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 13432 GGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 13490 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || ||||| ||||| |||||||| | || | |||||| | ||||||||| | ||| || Sbjct 13491 GAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGGCACGACAACTCGCC 13550 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 || |||||||||||||| ||||| |||||||| || || ||||| | | Sbjct 13551 ATCCGCCACGTAAAACTGACAAAACATG---TGGCACGGCGGCAGCGCCATCTCATTGAG 13607 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC-CTG-AT 29940 || || ||||| ||| ||| | || || | ||| || | | || | | | | Sbjct 13608 ATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAGTTCGTGCGCAGTTT 13667 Query 29941 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNN 29999 | || ||| | || || |||||||| ||| || | |||||||| Sbjct 13668 GTGGATCAC----CTCAGCAAGTTGATCCACTCCCTGTCCAGTGTAGTCTGCATGCATAT 13723 Query 30000 NNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30059 | || || | ||||||||| || ||||| |||||||| ||||| Sbjct 13724 CCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGTCCCAGATCTCCTA 13783 Query 30060 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 ||||||| || | || | |||||||| | |||| || || ||| | ||||||| Sbjct 13784 CTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGA 13843 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| | | | || | || ||| || | ||||||||||| Sbjct 13844 TATGAATGTCCTTCTGCTGCAACGTATGGGCACTCGTATCCCCACTAATGAACCACAGCA 13903 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAA---ACTGT 30235 |||||| | || | |||| || || |||| ||||| || | ||||| | | | Sbjct 13904 ATTCCTCCGCCACACCTCTCCAGAACACTTTCTTAGTCGTCAGCAATGGGAACACATTAT 13963 Query 30236 CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC-GTGCCTGTCCT 30294 ||| | || | | | | | ||||| |||||||| ||||| | |||| || ||||||| Sbjct 13964 CCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCCCTGTTCCTGTCCG 14021 Query 30295 GTCTCC 30300 |||||| Sbjct 14022 GTCTCC 14027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153745282260