Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq80 174 1e-38 >seq80 Length=102449 Score = 174 bits (192), Expect = 1e-38 Identities = 456/679 (67%), Gaps = 25/679 (4%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | |||||| ||||| || || || | ||||| Sbjct 13360 AGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGG 13419 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 27248 | ||| || || |||| | || | || || |||| || || ||| || || | || Sbjct 13420 ATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 13478 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||||||||||| || || || ||||| |||||||| |||| | |||||| | ||| || Sbjct 13479 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGGCA 13538 Query 27309 CGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||| | ||| ||||| |||||||||||||| | ||||||||| || || ||||| Sbjct 13539 CGACAACTCGCCATCCGCCACGTAAAACTGACAAAACATGTGGCACGGCGGCAGCGCCAT 13598 Query 27369 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGG 27423 | || || || || ||||| || ||| | || || | ||| || | Sbjct 13599 ----CTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAGT 13654 Query 27424 TTGTTC-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 27480 | || | | | || || ||| | || || |||||||| ||| || | |||| Sbjct 13655 TCGTGCGCAGTTTGTGGATCAC----CTCAGCAAGTTGATCCACTCCCTGTCCAGTGTAG 13710 Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 ||| | ||| |||||||||| ||||| || || | ||| ||||| || ||||| ||| Sbjct 13711 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGT 13770 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600 ||||| ||||| ||||||| || | || | |||||||| | |||| || || Sbjct 13771 CCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCA 13830 Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660 ||| | |||||||| | | |||||| | | | || | || ||| || Sbjct 13831 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGGGCACTCGTATCCCCACTA 13890 Query 27661 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAG 27719 | ||||||||||| |||||| | || | |||| || || |||| ||||| || | Sbjct 13891 ATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACTTTCTTAGTCGTCAGCAAT 13950 Query 27720 GGGAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 27776 ||||| | | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 13951 GGGAACACATTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 14008 Query 27777 C-GTGCCCGTCCTGTCTCC 27794 | || || |||| |||||| Sbjct 14009 CTGTTCCTGTCCGGTCTCC 14027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498598565210