Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq468 167 5e-36 seq625 149 1e-30 seq460 107 4e-18 seq68 105 1e-17 seq328 104 5e-17 seq89 93.3 9e-14 >seq468 Length=19833 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||||| ||||| || | || || || |||||||||||||| Sbjct 19705 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19646 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 19645 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 19586 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | ||| |||| || || Sbjct 19585 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCGGAAGGCTCCAC 19527 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| || |||| ||||| || || |||||||| || Sbjct 19526 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 19476 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || | || || || |||||||||||||| Sbjct 15399 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15458 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 15459 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15518 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | ||| |||| || || Sbjct 15519 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGATCGAGTCGGAAGGCTCCAC 15577 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| || |||| ||||| || || |||||||| || Sbjct 15578 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 15628 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGA 283032 ||| || |||||| ||| || || |||||||||||||| || ||| || || | |||| Sbjct 19832 ACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGC-TTCACATTGTCGA 19774 Query 283033 TAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092 | | ||| |||| || || ||||| ||||| ||||| || |||| ||||| || || | Sbjct 19773 TCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGA 19714 Query 283093 TCTGCAT 283099 ||||||| Sbjct 19713 TCTGCAT 19707 >seq625 Length=11448 Score = 149 bits (164), Expect = 1e-30 Identities = 148/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 2533 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2592 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||||| ||||||||||| ||||| || ||| || || | || Sbjct 2593 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 2651 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| ||||| || || Sbjct 2652 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2711 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 2712 GATCTGCAT 2720 >seq460 Length=20282 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 317025 CGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGC 317084 || |||||| || || | ||| ||||| ||| || | ||| || || ||||| || Sbjct 15356 CGACGGGAAGCCGTCAAGCTGGCCGTTGGAAATAGCGCGCATAAGCGTAGACTTACCGCA 15415 Query 317085 ACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTT 317144 ||| ||||| ||||| ||||| || || | || |||||| || ||||| |||||| Sbjct 15416 ACCGTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTCAGGCGAAGACGGGCGTTGTT 15475 Query 317145 CAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||| ||||||| || || || ||||||||||| | || |||||| Sbjct 15476 CAGCAGAATCATACCACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15527 Score = 93.3 bits (102), Expect = 9e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| |||||||| |||| ||| ||| || Sbjct 14502 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAGG 14561 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || || || ||||| |||||||||||||| || |||||||| | |||||| || ||| Sbjct 14562 TGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 14621 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| | || | ||| | || || || |||| || || || || Sbjct 14622 TTCCATACCGTACCGATGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 14681 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14682 TTACCGGCACCGTT 14695 >seq68 Length=108243 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | |||||| || || |||||||||||||| | Sbjct 97537 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 97478 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 97477 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 97418 Query 282992 AATACC 282997 || || Sbjct 97417 GATTCC 97412 >seq328 Length=32478 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| ||||| || | || || || |||||||||||||| Sbjct 140 ACCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 81 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 80 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 21 Query 282992 AATACCCTCCTTGTCTTGGA 283011 || || ||||||||||||| Sbjct 20 GATGCCTTCCTTGTCTTGGA 1 >seq89 Length=92099 Score = 93.3 bits (102), Expect = 9e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| || ||||||||||| | | ||| || ||||| ||||| |||||| | ||| Sbjct 25956 CAGGTTGGTGAAAATGTAACGAGAACTAGCCGCATCCTTACCACCCATCAGCCTTGTACC 25897 Query 273833 AAACTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||| ||||| | ||| | ||| || | |||||||| || ||| ||||||| |||| Sbjct 25896 AAATTGACCAATTGGGGA-TAGAAGGTGAACATTGTTGCTTCCAACGAAATCCTGCGCCA 25838 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 ||||||||||| ||||| | |||| ||||||||||| || ||| || | || Sbjct 25837 TATTCACGATACAGCCCTGCAAACCCGCCTCACCGTGGTGATATGCAGAGTGCTCAGAGA 25778 Query 273952 TATAACCACTGAACTGAGCAACCTT 273976 ||| ||| || || || ||||| Sbjct 25777 CATATCCAGCCAATTGTGCTACCTT 25753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046713584329140