Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq468 138 8e-28 seq625 125 5e-24 seq68 100 2e-16 seq328 95.1 9e-15 >seq468 Length=19833 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| || |||||| ||||||||||| || Sbjct 19709 CATGCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTC 19650 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || | Sbjct 19649 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 19590 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || || |||||||||| | | || | ||||| | || Sbjct 19589 CGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTC 19530 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| || ||||| || || || |||||||| ||||| ||||| Sbjct 19529 CACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 19479 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 15416 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 15475 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 15476 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 15535 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||||| | ||||| || | ||| || ||||| Sbjct 15536 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 15595 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| ||||| ||||| Sbjct 15596 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 15625 >seq625 Length=11448 Score = 125 bits (138), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || ||| |||| || |||||||| ||||| |||| Sbjct 2531 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2590 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 2591 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2650 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct 2651 --CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2708 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 2709 AAAGATCTGCATGAT 2723 >seq68 Length=108243 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||||||||||| ||||||||||| || | Sbjct 97536 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 97477 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| || || ||||||| ||||||||| || Sbjct 97476 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 97424 >seq328 Length=32478 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 122 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 63 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 62 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982020098470