Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712705.1_202016-08- 24] 1,910 sequences; 36,780,765 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq625 141 9e-29 seq468 140 3e-28 seq68 116 3e-21 seq328 107 2e-18 >seq625 Length=11448 Score = 141 bits (156), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 2531 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2590 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | |||| | |||||||||| |||||| ||||| || | Sbjct 2591 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 2649 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| ||||| || Sbjct 2650 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2709 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 2710 AAGATCTGCATG 2721 >seq468 Length=19833 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 15399 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 15458 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 15459 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 15518 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| |||||| |||||| || | | | | |||| | |||||| Sbjct 15519 ATGCCTTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCGGAAGGCTCCAC 15577 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||| || || || || ||||| ||||| || || |||||||| || Sbjct 15578 GTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 15628 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || || ||||||||| ||||| |||||| Sbjct 19706 GCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 19647 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 19646 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 19587 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| |||||| |||||| || | | | | |||| | ||||| Sbjct 19586 GATGCCTTCCTTGTCTTGGATTTTCTGCTTC-ACATTGTCGATCGAGTCGGAAGGCTCCA 19528 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | ||| || || || || ||||| ||||| || || |||||||| || Sbjct 19527 CGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 19476 >seq68 Length=108243 Score = 116 bits (128), Expect = 3e-21 Identities = 101/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| || ||||||||||||||||| ||||| ||||| Sbjct 97539 CCACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 97480 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGC 41751 || || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 97479 GACAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGC 97420 Query 41752 GGGA 41755 |||| Sbjct 97419 GGGA 97416 >seq328 Length=32478 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || || || ||||||||| ||||| |||||| Sbjct 139 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 80 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 79 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 20 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 19 ATGCCTTCCTTGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292962492000