Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 >seq9 Length=255281 Score = 102 bits (112), Expect = 8e-17 Identities = 209/309 (68%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||||| || ||||| |||||||| ||||| || || Sbjct 48562 ATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGG 48503 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || ||||| ||||| || || || | | || ||||| | || |||| || | Sbjct 48502 AAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCA 48445 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 | || |||||||||||||| || || ||||| || || ||||| | ||||| ||||| | Sbjct 48444 GGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGT 48385 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| ||| || | ||||||||| | || | | |||| |||| Sbjct 48384 GACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTT 48325 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || || ||| | ||||| || ||||| | ||| | || | | || | Sbjct 48324 CCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGA 48265 Query 17532 TGGGGAATA 17540 ||||||||| Sbjct 48264 TGGGGAATA 48256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532441403120