Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq88 125 6e-24 >seq88 Length=94159 Score = 125 bits (138), Expect = 6e-24 Identities = 190/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || |||||||||| ||| |||||||||||||| || | || ||||| || Sbjct 5676 ATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAATTGTCG 5617 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 |||||| | |||||| | || | || |||||||| || || ||||||||||| || | Sbjct 5616 TGCCAAATGTACCAGCGTTCAGCTGACATGGGCCTCGGCGTGCCGTTCAACATCGCCAGT 5557 Query 19092 TATGCACTTCTTAC-CTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAAT 19150 ||||| || || || | || | || || || || | || | ||| | || || || || Sbjct 5556 TATGCGCTACTGACGCGAC-TTGTGGCCCAAGTGGCTGGTTTGAAATCTGGCGAATTTAT 5498 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA--TGCTTTAAAAGTGCAG 19208 || | || || |||||||| | ||| |||| || ||||| |||| | || |||| Sbjct 5497 CCACATTATTGGTGATGCACACGTATACCTGAACCACATAGAGCCGCTTCAGAA--GCAG 5440 Query 19209 CTAGCTCGATCCCCAAAACCTTTTCC 19234 ||| | || |||| ||| ||||| Sbjct 5439 CTAACGCGCACCCCGCGACCATTTCC 5414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494096545530