Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq254 96.9 4e-15 >seq254 Length=42645 Score = 96.9 bits (106), Expect = 4e-15 Identities = 464/731 (63%), Gaps = 14/731 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || ||||| |||||||| | || || || ||| || | ||||| | ||| | Sbjct 40718 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40777 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40778 CACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGC-ATAGAA 40836 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | || | | | || |||||| || ||||| ||||| | |||| | | Sbjct 40837 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAA 40896 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||||| ||||||||||||| || || | | ||| ||||| ||| || Sbjct 40897 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 40956 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | || || | ||| | |||| || ||| || || || || ||||| Sbjct 40957 CTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41016 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 54307 | || || || ||| ||| ||||| | | || || || | | | | |||| Sbjct 41017 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41074 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || |||||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41075 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41134 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || ||| |||||| |||| | | || || ||||| ||| |||| || Sbjct 41135 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41194 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 41195 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41254 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||||| | || | | || | | | || || |||| || || ||||| | ||| Sbjct 41255 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41314 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCA-GCAAG---TAGGATTTTTCCAA 54603 ||||| || | ||| || | ||| || | || | ||| || | |||| Sbjct 41315 TGCTGGGGACGTTCCACCACTTTGCCGTGGA----CACGGAAGAGATATCCCCTCTCCAG 41370 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || ||||| |||||||| | |||| ||||||||| || | ||||| | ||||| || Sbjct 41371 TGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAG 41430 Query 54664 TTTATCCTTAT 54674 || || |||| Sbjct 41431 TTGGTCTTTAT 41441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706504628320