Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 277 2e-69 seq987 132 5e-26 seq624 127 2e-24 seq16 109 6e-19 seq519 107 2e-18 seq275 98.7 1e-15 >seq9 Length=255281 Score = 277 bits (306), Expect = 2e-69 Identities = 436/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 48234 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 48293 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||| ||||| |||||||| | || ||| ||||| || | || | | | || Sbjct 48294 AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAAG 48353 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || |||||||||||||| ||||||| || Sbjct 48354 -GACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTT 48412 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGTTTCGCTCAGGAGGTG 116827 |||||||| || |||||||| |||||||| |||| || | ||| || | || || Sbjct 48413 TGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAAC-TTTAGCA-ATGAAGTA 48470 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | ||||| || |||||||||||||| || || ||||| |||||| | ||||| Sbjct 48471 CAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACTCA 48530 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||| ||||||||| | | | || |||| || | | || Sbjct 48531 GAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC-- 48588 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT-GGGCGCTGCG 117003 || || || || ||||| || ||||| || | ||||||| |||| ||||||| | Sbjct 48589 -TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGC-GAGTTGGGCGCTAAG 48646 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||| || | | || | || | | | ||||| || |||| || || || || || Sbjct 48647 ATGGTGCGACCCGAAAGTGTCCTCATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGA 48706 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| ||||||| |||||| || | |||| || ||||||||||| || || ||||| Sbjct 48707 GGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCAT 48766 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||| ||| |||||||||||| | || || ||| |||| ||||| Sbjct 48767 GCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTATGCACACAGACTT 48826 Query 117184 TGCCTGTTTGCTGT 117197 ||| ||| || ||| Sbjct 48827 TGCTTGTCTGTTGT 48840 >seq987 Length=4295 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || |||||||| |||||||| ||||||| || | Sbjct 218 AAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCT 159 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| | ||||| | ||||| || |||||||| | ||| Sbjct 158 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 99 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 98 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 39 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||| | || || || || ||| Sbjct 38 AACATCCAGAAGGAGTCTACACTTCACCTGGTG 6 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || |||||||| |||||||| ||||||| || | Sbjct 4078 AAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCT 4137 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| | ||||| | ||||| || |||||||| | ||| Sbjct 4138 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 4197 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||| Sbjct 4198 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 4257 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||| | || || || || ||| Sbjct 4258 AACATCCAGAAGGAGTCTACACTTCACCTGGTG 4290 >seq624 Length=11309 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||||||| || | | Sbjct 8480 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8539 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| || || | |||||| Sbjct 8540 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8599 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 8600 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 8659 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 8660 ATCCAGAAGG 8669 >seq16 Length=215431 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || |||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| Sbjct 3 GAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGT 62 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||| || | |||||||||||||||||||||| | || || || || ||| | ||| || Sbjct 63 CGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTG 122 Query 40909 AGGGGCGG 40916 | ||||| Sbjct 123 CGTGGCGG 130 >seq519 Length=15923 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| | |||||||| || || |||| ||| ||||| |||||||| Sbjct 6 GACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAG 65 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| ||||| || | |||||||||||||||||||||| | || || || || ||| Sbjct 66 GACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCACCTGGTG 122 >seq275 Length=40207 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 31889 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 31948 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||| || || ||| |||| || | Sbjct 31949 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 32008 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 32009 GGTGGTGGC 32017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206100551840