Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq88 179 3e-40 >seq88 Length=94159 Score = 179 bits (198), Expect = 3e-40 Identities = 422/621 (68%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 97008 TGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGA-GAGCATCAATGTGATTCACA 97065 ||||||| || | || || ||||| ||||||| | ||| | | || ||||| |||| Sbjct 5412 TGGGAAATGGTCGCGGGGTGCGCGTTAGCTGCT-TCTGAAGCGGCTCTATGTGGTTCAGG 5470 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | ||| ||||| || | | |||| |||||||| |||| ||| ||| || ||| Sbjct 5471 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGATTTCAAACCAGCCACTTGG 5530 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || | | | || | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 5531 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 5590 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 |||||||| | || || | || || || | | ||||| ||| |||||||||| Sbjct 5591 TCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCCATCCGCCACGTAAAACTGACAA 5650 Query 97246 AATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCACACA 97303 || | ||||| || |||| |||||| | ||| | |||| |||||| ||| ||| Sbjct 5651 AACATGTGACATGGTGGCAGCGCCATCTCATTG--AGATCTGCCGGATTCCACGCAGACA 5708 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 || || | | ||||| ||||| ||| | | | | || | || | ||||| Sbjct 5709 ACACAATCCGACGGTCGGTCGGGTTCGTGCGCAATTTGTGGATCACCTCAGCAAGTTGAT 5768 Query 97364 CAACGCCTTCTCCACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | || |||| |||| || | || ||| || || || || | |||||||| || | Sbjct 5769 CCACCCCTTGTCCAGTGTAGTCTGCATGCATAT--CCGTG-TACTTGGCTCCAAAGTGAC 5825 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG-AAACCAAGC 97479 ||| |||||||||||||| ||||| ||||||||| |||| || | || | | ||| Sbjct 5826 GCCACTGGAATCCATAAACTGGTCCCAGGTCTCCTACTTCCCT-TGACTGCAGTCCACAA 5884 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCA-CACCAGATGCTGCAAG 97538 | || ||||| | |||||||| ||||||| || || | || ||||||| Sbjct 5885 CTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGC 5944 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 | | || || ||| || || || ||||||| ||||| ||| | ||||||||||| Sbjct 5945 GTATGCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCA 6003 Query 97599 AAATACTCTCTTAGTTGTTAA 97619 |||||||||||||| || || Sbjct 6004 GAATACTCTCTTAGTCGTCAA 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775403441380