Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq987 145 5e-30 seq624 118 7e-22 seq275 100 2e-16 seq519 95.1 8e-15 seq16 91.5 1e-13 >seq987 Length=4295 Score = 145 bits (160), Expect = 5e-30 Identities = 174/233 (75%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| |||||||||||| |||| || |||| Sbjct 4 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 63 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| || || ||||||||||| | |||| | || |||||||| Sbjct 64 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTC 122 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||||| | || | | ||||| || | | || ||||| | ||||||||| Sbjct 123 TTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGT 182 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC---GCTCGAATGGTGCGTG 34406 ||||| || || || |||||||||||||||||| ||| | ||| || ||| Sbjct 183 CTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTTGGCTTGTATGTTGTGTG 235 Score = 145 bits (160), Expect = 5e-30 Identities = 174/233 (75%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| |||||||||||| |||| || |||| Sbjct 4292 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 4233 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| ||||| || || ||||||||||| | |||| | || |||||||| Sbjct 4232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTC 4174 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||||| | || | | ||||| || | | || ||||| | ||||||||| Sbjct 4173 TTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGT 4114 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC---GCTCGAATGGTGCGTG 34406 ||||| || || || |||||||||||||||||| ||| | ||| || ||| Sbjct 4113 CTTGCCCGTCAGTGTCTTCACAAAGATCTGCATCTTGGCTTGTATGTTGTGTG 4061 >seq624 Length=11309 Score = 118 bits (130), Expect = 7e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 8667 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 8608 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | | ||||||||| || || ||||| | || | | Sbjct 8607 AGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 8548 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || || | || || ||||| | ||||||||| ||||| || || || ||||||||| Sbjct 8547 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 8488 Query 34382 ATCTGCAT 34389 |||||||| Sbjct 8487 ATCTGCAT 8480 >seq275 Length=40207 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| ||||||||||| ||| Sbjct 32013 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 31954 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 31953 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 31901 >seq519 Length=15923 Score = 95.1 bits (104), Expect = 8e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||||||| | ||| || ||||| |||||||||||| Sbjct 140 TCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 81 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| || |||| |||| ||||||||| ||||| || || ||||||||||| | ||| Sbjct 80 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 21 Query 34281 GCACGCTCTCCTTGTC 34296 | | || |||||||| Sbjct 20 G-ATGCCTTCCTTGTC 6 >seq16 Length=215431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||||||| | ||| || ||||| |||||||||||| | Sbjct 130 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 71 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| || |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 70 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063991247040