Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq88 138 2e-27 >seq88 Length=94159 Score = 138 bits (152), Expect = 2e-27 Identities = 409/622 (66%), Gaps = 14/622 (2%) Strand=Plus/Minus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 || || |||| | | ||||||||||| || | ||| ||| | ||||||||| || || Sbjct 6021 ACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAGGAATTACTGTGGTTCATTAGTGGG 5962 Query 35294 AATAC-AGA-CGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGT 35351 |||| || ||| | | || ||||| | || || |||||| | | ||||| | Sbjct 5961 GATACGAGTGCGCATACGCTGCAGC--AGAAGGACATTCATATCTGGGATGGCAATGGAT 5904 Query 35352 CGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCG 35411 |||| || | |||||||||| | || | | || | || ||||| ||||||| | Sbjct 5903 CGCGAGAGTATTTGGACAGTTGTGGACTGCAGTCAAGGGAAGTAGGAGACCTGGGACCAG 5844 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT---GATACCTGTTCTTCCGATT 35468 | || |||||||| |||||||| ||||| || | || |||| || | | || | Sbjct 5843 TTTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGATA--TGCA-TGCAGACT 5787 Query 35469 ATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAG 35528 | |||||| | || | |||||| | || | | | | | || | || || Sbjct 5786 ACACTGGACAAGGGGTGGATCAACTTGCTGAGGTGATCCACAAATTGCGCACGAACCCGA 5727 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 || | |||| | || | || |||||||| ||||| | ||||| || | Sbjct 5726 CCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCGGCAGATCTCAATGAGATGGCGCTGC 5667 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 | ||||| |||||| | ||| ||||| ||||| |||| |||||||||||||| ||| Sbjct 5666 CACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAATTGTCGTGCCAAATGT 5607 Query 35649 ATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCT 35706 | ||||| ||| || ||| || | |||||||| ||||| || || || | || Sbjct 5606 ACCAGCGTTCAGCTGACATG--GGCCTCGGCGTGCCGTTCAACATCGCCAGTTATGCGCT 5549 Query 35707 TCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCT 35766 ||||| | || ||||| ||| ||| | ||| | || || ||||||| || | | Sbjct 5548 ACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGAAATCTGGCGAATTTATCCACATTAT 5489 Query 35767 TGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGT 35826 |||||| |||||| | || | |||||| ||| | | |||||||| | ||| Sbjct 5488 TGGTGATGCACACGTATACCTGAACCACATAGAGCCGCTTCAGAAGCAGCTAACGCGCAC 5429 Query 35827 CCCTAGACCATTCCCTAAGTTG 35848 ||| ||||||| || | |||| Sbjct 5428 CCCGCGACCATTTCCCACGTTG 5407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989558210822470