Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq88 159 3e-34 >seq88 Length=94159 Score = 159 bits (176), Expect = 3e-34 Identities = 305/447 (68%), Gaps = 2/447 (0%) Strand=Plus/Plus Query 20889 GGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAA 20948 ||||| || |||||||| | | ||||| | | || || || | |||||| ||| Sbjct 5414 GGAAATGGTCGCGGGGTGCGCGTTAGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTAT 5473 Query 20949 ACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCG 21008 ||||| || ||||| | |||| | ||| || || | ||| || | || || || Sbjct 5474 ACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCC 5533 Query 21009 ATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCG 21068 | || |||||| || || || ||||||||||| ||||| || |||||||||||||| Sbjct 5534 ACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCA 5593 Query 21069 GCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAA 21128 || || | |||||||| ||||| |||| || || ||||||||||||||||| || Sbjct 5594 GCTGAACGCTGGTACATTTGGCACGACAATTCGCCATCCGCCACGTAAAACTGACAAAAC 5653 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | |||||| || || || |||||| ||| || || || |||||||| ||| || Sbjct 5654 ATGTGACATGGTGGCAGCGCCATCTCATTGAGATCTGCCGGATTCCACGCAGACAACACA 5713 Query 21189 ATGCGCCGATCGTGGGGCCGCCTG-TTAATTAGATCCACCACGTAACGCAGCTGGTCCAC 21247 || || || ||| || | || |||| | | | ||| | | || || ||||| Sbjct 5714 ATCCGACGGTCGGTCGGGTTCGTGCGCAATTTG-TGGATCACCTCAGCAAGTTGATCCAC 5772 Query 21248 CCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTG 21307 ||| || || ||||| || | || |||||| || ||||| || | |||||| Sbjct 5773 CCCTTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTG 5832 Query 21308 GAACCCGTACACCGGCCCCAGATCGCC 21334 ||| || || || || ||||| || || Sbjct 5833 GAATCCATAAACTGGTCCCAGGTCTCC 5859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765395700320