Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq45 132 8e-27 >seq45 Length=135798 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 29602 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 29661 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 29662 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 29721 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 29722 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 29781 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 29782 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 29841 Query 16672 CCG 16674 ||| Sbjct 29842 CCG 29844 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || ||||| || || ||||||||||| || || Sbjct 32569 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATTCAGGGCATCACCAAGCCTGCCAT 32510 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| |||||||| || || ||||| ||||||| || |||| || |||| Sbjct 32509 CCGTCGTCTGGCACGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTGATCTACGAGGAGAC 32450 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | ||||| ||| ||| |||| || || | || || || Sbjct 32449 GCGTGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGACTCTGTGACGTACACGGA 32390 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | ||||| | || || || | || ||||| || Sbjct 32389 GCACGCTCGCCGCAAAACGGTGACTGCGATGGACGTGGTGTACGCTCTAAAGCGTCAGGG 32330 Query 16672 CCG 16674 ||| Sbjct 32329 CCG 32327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073340299562