Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 156 5e-33 seq254 104 3e-17 >seq9 Length=255281 Score = 156 bits (172), Expect = 5e-33 Identities = 388/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||| || || || ||||| ||| || || | |||||| || |||||||| | Sbjct 48840 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 48781 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | || || ||||| || |||||||| || ||||| || ||||| || || || | Sbjct 48780 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 48721 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33474 | ||||||||||| || || || ||||| || | ||| | ||| || || | || Sbjct 48720 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 48661 Query 33475 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 || || ||| || | |||||| |||||||| | ||||| || || || || | Sbjct 48660 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 48601 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | ||| | || | || || || | || || | || || || || | || Sbjct 48600 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 48541 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||| || || || ||||| |||||||| || || || |||||||| || | ||||| Sbjct 48540 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 48481 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | | ||||||||| | | ||| |||| |||| || || ||||| || || || Sbjct 48480 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 48423 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 48422 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 48363 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 48362 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 48303 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || ||||| | ||| | ||| | | ||||| ||||| Sbjct 48302 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 48258 >seq254 Length=42645 Score = 104 bits (114), Expect = 3e-17 Identities = 462/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| |||||||| | || || || ||| || | ||||| | ||| | Sbjct 40718 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40777 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40778 CACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGC-ATAGAA 40836 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 | || | | | || |||||| || ||||| ||||| | |||| | | Sbjct 40837 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAA 40896 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||||| ||||||||||||| || || || | ||| ||||| ||| || Sbjct 40897 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 40956 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||| || | ||| | || || | ||| | |||| || ||| || || || ||||| || Sbjct 40957 CTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41016 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 63494 || || || ||| ||| ||||| | | || || || | | | | |||| Sbjct 41017 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41074 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || |||||| || ||||| | || || |||| | |||||||| || || Sbjct 41075 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41134 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || || ||||| |||| | | || || ||||| ||| |||| || Sbjct 41135 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41194 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 41195 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41254 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41255 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41314 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||| || | ||| || | ||| || | || | || | |||| || Sbjct 41315 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 41374 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 41375 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 41434 Query 63855 TCCTTAT 63861 || |||| Sbjct 41435 TCTTTAT 41441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931361567440