Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq254 302 1e-76 seq88 118 3e-21 >seq254 Length=42645 Score = 302 bits (334), Expect = 1e-76 Identities = 1050/1628 (64%), Gaps = 33/1628 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || ||| ||||||||| || | |||||| ||||||| Sbjct 41229 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCG 41170 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||| |||| || || || || || || | |||||| || || | Sbjct 41169 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41110 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| ||||| || ||||| | || ||||| | || || Sbjct 41109 TGTGCGTGCATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41050 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| |||||||| || | || || || | | |||||||| || Sbjct 41049 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 40990 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || |||| || | ||||| |||||||||||||| || ||||| || | ||| Sbjct 40989 GTGTTTAACGATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 40930 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||| || || || || ||| | |||||||| | || || || || ||| Sbjct 40929 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAAC 40870 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| ||||||||||| |||||||||| || ||||| | || | Sbjct 40869 CATGGTAACGAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTA 40810 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| |||||||| | || ||| | || || || |||| ||| Sbjct 40809 TTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCC 40750 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||||| | ||| ||||| || || | | | || | || ||||| || || Sbjct 40749 GGTCTGTACGAGTGCTGGGGAGAGGAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAA 40690 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || |||||||| || || |||| ||||| || || |||| ||||| Sbjct 40689 GGCCGCGCCCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAG 40630 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||||| ||||| || | |||||||||||| || ||| Sbjct 40629 ATTGAGACGGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAG 40570 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || |||| ||||||| | || || | || || || || | Sbjct 40569 CAGAACCTCGGCACGATTCGCTCGAGCAACTTGTGCTGTGAAGTGATGGAGTATACGTCG 40510 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAG 364324 || || ||| ||||| || ||| | ||||| | ||||| || ||| || | || Sbjct 40509 CCTGATGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGTTGAGAAC 40450 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCTC 364383 ||| || || || || | || ||||| || | | || | || |||| || Sbjct 40449 GCCGTA--TTCAACTACAAGAAGCTGTATGATGTCGTC-AAGGTGATCACACGCAACCTG 40393 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGT 364443 ||||||| |||||| || || || || || ||| || ||| || |||||| Sbjct 40392 AACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATTCCAACATGCGT 40333 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || || || ||||| ||||||| |||||||| || |||| ||| || | | | | Sbjct 40332 CACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCCTCATGGACTTT 40273 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 || || || || || || |||| || || ||| | ||||| || || || || | Sbjct 40272 GCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGACCATCTACTAC 40213 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || | ||| | || || |||| | ||| |||| |||| || Sbjct 40212 GCTTCTATGGAGACGTCAATGGAACTGGCCACGGAATTGGGCCCGTACGAGACTTTCCAG 40153 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || || ||| |||| | |||||||| ||| | ||||| |||||||| || || Sbjct 40152 GGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAACGTCACGCCTTC-CTC 40094 Query 364684 CG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 || ||| |||||| | |||| || || ||| | || ||||| || Sbjct 40093 CGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAACGGCCTGCGCAATTC 40034 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 ||| | ||||| ||||| ||||| ||||| |||||||||||||| || ||||||| Sbjct 40033 GCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTCGGTAATAACGAGTC 39974 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||||||||| || || | || ||||| || ||| | ||||| ||| | | Sbjct 39973 TATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCGGGAGAGTTTACCAT 39914 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| | || || || || | || |||||| | || Sbjct 39913 CGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGGGCTCCTGAGGTGCG 39854 Query 364920 GAACTATATC----ATCGCCGCTAATGGTTCTGTGCAGAACAT----TCCAGGATTTCCA 364971 ||| | ||| || | || ||||| |||||||| | |||| |||| Sbjct 39853 TAACCAGATCTTGAATGACGGC----GGTTCGGTGCAGAATGTGAGCTCCA----TTCCG 39802 Query 364972 GAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCATT 365028 || | | ||| | ||||| || || ||||| || || || ||| || | | Sbjct 39801 GACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGTCGATTCTG 39745 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 || || | || ||||| ||||| | ||||||||||| |||||| | ||| | ||| Sbjct 39744 GACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCACATC 39685 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 | | || || |||||||||||| ||||| || |||| |||||| || || Sbjct 39684 GCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 39625 Query 365149 AAGACAGG 365156 ||||| || Sbjct 39624 AAGACGGG 39617 >seq88 Length=94159 Score = 118 bits (130), Expect = 3e-21 Identities = 400/604 (66%), Gaps = 28/604 (5%) Strand=Plus/Minus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA-A 111418 || ||| | |||||||| ||| | || ||| | ||| || || |||||| || | Sbjct 5988 GAGGAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCT-GCAGCAGAAGGA 5930 Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGTCG 111477 | | || |||||||| |||||||| || || | | | || |||||| | || | Sbjct 5929 CATTCATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGA--CAGTTGTGGACTGCAG 5872 Query 111478 ACAACG-AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 ||| | ||| ||| || || ||||||||||| ||||| || ||||| |||||||| || Sbjct 5871 TCAAGGGAAGTAGGAGACCTGGGACCAGTTTATGGATTCCAGTGGCGTCACTTTGGAGCC 5812 Query 111537 GACTACAA----AACCATGCACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGA 111591 | |||| | |||||| |||| || ||| || |||||| || | || Sbjct 5811 AAGTACACGGATATGCATGCA-GACTACACTGG---ACAAGGGGTGGATCAACTTGCTGA 5756 Query 111592 ATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGG 111650 || || | |||||| | || ||||| || ||||| ||| | || ||| ||| Sbjct 5755 G-GTGATCCA-CAAATTGCGCACGAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGG 5698 Query 111651 AACCC---AAATG-CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTT 111706 || || | || || || | ||||| || ||||||||||| | | || ||||| Sbjct 5697 AATCCGGCAGATCTCAATG----AGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTT 5642 Query 111707 TTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCT 111766 ||| || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 5641 TTACGTGGCGGATGGCGAATTGTCGTGCCAAATGTACCAGCGTTCAGCTGACATGGGCCT 5582 Query 111767 TGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTAC 111826 || || ||||| || || || ||||| || ||||| || | | | || || | | Sbjct 5581 CGGCGTGCCGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGC 5522 Query 111827 AAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 | | ||| | || ||||| || ||| |||| || ||||| || || ||| ||||| Sbjct 5521 TGGTTTGAAATCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCA 5462 Query 111887 CATTGATGCACTTAAAACACAGTTGAAGCGCAAACC-ATACGATTTCCCAACGATTCATA 111945 ||| || | ||| | | ||| | | ||||| || || ||||||| ||| | || | Sbjct 5461 CATAGAGCCGCTTCAGAAGCAGCTAACGCGCACCCCGCGACCATTTCCC-ACGTTGCACA 5403 Query 111946 TCAA 111949 |||| Sbjct 5402 TCAA 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319633790588