Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq254 159 3e-34 seq987 131 2e-25 seq519 111 1e-19 seq624 107 2e-18 seq16 105 6e-18 seq275 96.9 3e-15 >seq254 Length=42645 Score = 159 bits (176), Expect = 3e-34 Identities = 737/1148 (64%), Gaps = 40/1148 (3%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| |||||| || || | ||| || || |||| |||||| || Sbjct 39901 GTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGT 39960 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| ||||| | |||||||||||| || ||||| || || || | || || ||||| Sbjct 39961 GAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGG 40020 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| |||| | |||||||||||||||| ||| | | ||||| |||| | |||| Sbjct 40021 CGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCA 40080 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || | ||| | |||| |||||| ||| |||| || || |||| ||| Sbjct 40081 GTCCCACAGACCGGAGGAAGGCGTGACGTTCCACATATCGAACTGGAAGATACCCTTGCT 40140 Query 145288 GGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTC 145345 ||| || | ||| ||||| || || | ||||| | |||| || || | Sbjct 40141 GGCAGGCGAACCCTGGAAAG--TCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATTGAC 40198 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 | ||||| || || | || || |||||| || | | |||||||| ||| || Sbjct 40199 GTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCC 40258 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 |||||| ||| | | || || | ||||| || || || ||||| | || | Sbjct 40259 GGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATA 40318 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATA---GGATA-TCGATT 145521 || | || || || ||||||| | | || ||| ||| || || | | | Sbjct 40319 CCAACAGGACGGTGACGCATGTTGGAATTGCGAGC---CTCAATAACGGGGTAGTAGTTG 40375 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || |||||| | || |||| ||| || | ||||| | | || ||| | Sbjct 40376 AC-GTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTT 40434 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 ||| || || | ||||||| | | || || | |||||||| || Sbjct 40435 GTAGTTGAATACGGCGTTCTCAACGA------ACTTGGGGAGCGCCACGGACGCCAAGTT 40488 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || ||| ||| || |||| || | || | | | || |||||| ||||| Sbjct 40489 GCACACGGCCACCTCATCAGGCGACG-TATACTCCATCACTTCACAGCACAAGTTGCTCG 40547 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | || || || || || ||||||||| || | |||| ||||||||||| | || Sbjct 40548 AGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACA 40607 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 || | || |||| ||||| | ||||| |||| ||| ||| || | || || Sbjct 40608 TGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAAC--CACAGCTGTTGAGC 40665 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 | | || || |||||| || ||||| ||| | ||| ||| ||| | Sbjct 40666 ATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTC 40725 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 || |||| ||| |||| |||||| || ||||||||| | || ||| ||| Sbjct 40726 CTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 40785 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CG 145996 ||||| | || |||| ||| || | ||| ||||||||||| || || | ||||| || Sbjct 40786 ATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 40845 Query 145997 CGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATG 146053 || | |||| ||| | ||||| ||| || || || ||| || | | | | Sbjct 40846 TGCACGGTGCA--GCTC-GTTACCATGGTTCTTGC-GCAGATCCAAGAACTC-AAACACA 40900 Query 146054 TCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGG 146110 || |||||||||||||| | ||| | || | | ||| || ||||| ||||||||| Sbjct 40901 TCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGG 40960 Query 146111 TCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACG 146170 ||||||| |||| || | | |||||| || |||| |||||| || |||| ||| | Sbjct 40961 TCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAG 41020 Query 146171 CCGTTCGT 146178 |||||||| Sbjct 41021 CCGTTCGT 41028 >seq987 Length=4295 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | || |||||||| || |||||||| ||||||| ||||| | Sbjct 1 CGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 60 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | |||||||||||| || ||||| ||||| ||| Sbjct 61 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 120 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||||||||| | | || | | || | | ||| | ||||| || | | Sbjct 121 TCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATG 180 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 181 GTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 215 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | || |||||||| || |||||||| ||||||| ||||| | Sbjct 4295 CGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 4236 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | |||||||||||| || ||||| ||||| ||| Sbjct 4235 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTG 4176 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||||||||| | | || | | || | | ||| | ||||| || | | Sbjct 4175 TCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATG 4116 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 4115 GTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCAT 4081 >seq519 Length=15923 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || |||||||| || |||||||| |||||| Sbjct 139 CCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 80 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 79 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 20 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 19 ATGCCTTCCTTGTC 6 >seq624 Length=11309 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 8669 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8610 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || ||||| || ||||| |||||||||||||| | | Sbjct 8609 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 8550 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | ||||| || | ||| || || || || || || || | Sbjct 8549 CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 8490 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 8489 AGATCTGCATGA 8478 >seq16 Length=215431 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || ||||| | || | || |||||||| || |||||||| |||||| Sbjct 130 CCGCCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 71 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 70 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 11 Query 131128 ATTCCTTC 131135 || ||||| Sbjct 10 ATGCCTTC 3 >seq275 Length=40207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||| || |||||||| || | Sbjct 32013 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 31954 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 31953 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 31894 Query 131128 ATTCCT 131133 |||||| Sbjct 31893 ATTCCT 31888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000799074560