Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq624 109 5e-19 seq987 91.5 1e-13 >seq624 Length=11309 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | | Sbjct 8480 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 8539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| ||||| || || || Sbjct 8540 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCGCCTGACCAG 8599 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 8600 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 8659 Query 22399 ATTCAAAA 22406 || || || Sbjct 8660 ATCCAGAA 8667 >seq987 Length=4295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || || || || |||| || || ||||| | Sbjct 218 AAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCT 159 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 158 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 99 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 98 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 39 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 38 AACATCCAGAAGGAGTCTAC 19 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || || || || |||| || || ||||| | Sbjct 4078 AAGATGCAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCT 4137 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 4138 TCGGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGAC 4197 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||| | ||| ||| Sbjct 4198 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 4257 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 4258 AACATCCAGAAGGAGTCTAC 4277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717595205210