Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 266 6e-66 seq254 206 5e-48 >seq9 Length=255281 Score = 266 bits (294), Expect = 6e-66 Identities = 588/873 (67%), Gaps = 33/873 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || ||| | ||| ||||||||||||||| || | | |||||| || Sbjct 48264 ATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCG 48323 Query 42345 GAGGAGATTGACCTGGCCAAGGAC---ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 || ||| | ||| ||| | ||| | || | | |||| | || | || ||||| Sbjct 48324 GAAGAGCTGGACTTGGTACACGACCTCAAGGACTG--GGGAAAC-CTCACAGACAACGAG 48380 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| |||| || | |||||||||| |||||| ||| ||||| || || ||| Sbjct 48381 CGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAG 48440 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||||| | | || | || || || ||| |||||| || |||||||||||| Sbjct 48441 AACCTGGCTATGAACTTTAGCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGC 48500 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACG 42578 ||||| || ||||| |||||| | ||||| ||||||||| | ||||||| ||||| Sbjct 48501 TTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTCG---CTGCTCATTGACACG 48557 Query 42579 TACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 |||||| ||| | || ||| || ||| | || || ||||| || || || Sbjct 48558 TACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAGACCATCCCGTGT 48617 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG----CAACGTT 42694 | | ||||||||| |||||||| | ||| ||| ||||| | | | Sbjct 48618 GTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGA----CCCGAAAGTGTCCTCATA 48673 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 | ||| | || | || ||| | || || ||||| ||||||||||||||| |||| Sbjct 48674 CCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTG 48733 Query 42755 CTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||||||||||||||||||| || ||| || ||||| || || | |||||| ||||| | Sbjct 48734 CTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTGAGCTTCTCCAACGAGC 48792 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 |||| || | || || || |||| | |||||||| || || ||| ||||| | | Sbjct 48793 TCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGA---AGC 48849 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | | ||||| || || |||| || | | || ||| || || ||| |||||| Sbjct 48850 TGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATCG 48909 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 | | ||||| | | | ||||| || ||| ||| ||||||||||| | |||| Sbjct 48910 AACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCA 48969 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT----GCCAGATGGGTCTCAGC 43049 ||||| ||||||| ||| ||| || |||| || |||| || | || ||| || Sbjct 48970 TGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAG- 49028 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 |||||||| | ||| || |||| ||||| | ||||| | |||||||| Sbjct 49029 ---ATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAG 49085 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 || ||||| ||||||||||| || | ||| ||| Sbjct 49086 ACTAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 49118 >seq254 Length=42645 Score = 206 bits (228), Expect = 5e-48 Identities = 881/1371 (64%), Gaps = 52/1371 (4%) Strand=Plus/Plus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||| | ||||||| | ||||||||||| ||||||||||| | ||| | ||| Sbjct 39898 CAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGA 39957 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | ||| ||| ||||| ||| | || || || ||||| ||||| ||| |||||||| Sbjct 39958 GGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCAT 40017 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTC 244257 |||| ||||| || || | || ||||| ||| || | || | ||| | Sbjct 40018 CGGCGCGACCAGGAGCGAATTGCGCAGGCCGT---TCTTGACCACCTTCTCCTTAAGCGC 40074 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 ||||||||||| | ||| |||| || ||| | |||||| || ||||| | Sbjct 40075 AGCCCAGTCCCACA-GACCG-GAGGAAGGCG----TGACGTTCCACATATCGAACTGGAA 40128 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 | ||||||||| | || |||| | | ||| ||| || || | |||||| Sbjct 40129 GATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAG 40188 Query 244378 CTTACAGCTCTCGTCG--AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATG 244435 || || | |||| | | ||||||||||||||||||||||| ||||||| | Sbjct 40189 -TTCCAT-TGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGC 40246 Query 244436 TCGCGGGCCTTGCCG--CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTC 244493 || || |||| ||| | ||| | | | |||| | ||||| |||| || || | Sbjct 40247 TCACGCGCCT--CCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGC 40304 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCA 244550 ||||||| || || || | || | ||| ||| ||||||| ||| || || | Sbjct 40305 CCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCG---AGCCTCAATAA 40361 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGT 244610 ||||||| ||||| ||||||| |||||||| |||||||| ||||||| |||||| | Sbjct 40362 CGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACAT 40421 Query 244611 CGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAAC 244669 | |||| || ||| | | || ||||| | ||| || ||| Sbjct 40422 CATACAGCTTCTTGTAGTTGAA----TA--------CGGCG-------TTCTCAACGAAC 40462 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | ||| || ||| |||| |||||| ||||||||||| || | || |||| Sbjct 40463 TTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCC 40522 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | || ||| | ||| || | || ||||| |||| ||| ||||| |||||| Sbjct 40523 ATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTG 40582 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||| |||||||||||| | |||||| ||| | || ||||| | ||| ||| | || Sbjct 40583 CGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGA 40642 Query 244850 ACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAG 244909 | | ||| || | ||| |||| ||| |||| || ||| || |||||| Sbjct 40643 ATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTAC 40702 Query 244910 CGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCC 244969 |||| | ||||||||| |||||| ||||| || || ||| | || Sbjct 40703 TTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACC-GGGAGCCTCGTT 40761 Query 244970 GGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGAT 245028 ||| || | | |||||||| ||| | ||| || | || |||||| || || || | Sbjct 40762 GGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCAC 40821 Query 245029 CCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAG 245088 ||| || || | ||| | ||| | | | ||| || ||| |||||| | ||| Sbjct 40822 CCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAG 40881 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 ||||| || ||||| || || ||||||| || |||| || | || | | || Sbjct 40882 ATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTT 40941 Query 245149 CCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAG 245207 || || || ||||||||||| | | | || |||| || | ||||| | | Sbjct 40942 GCGTTTACCTCCACCCTGGTCCACGTAACGTGCCG-TATCGTTAAACACTCGCAGCATGG 41000 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | |||||||| || |||||| ||||| ||||||| | | | | || || Sbjct 41001 GGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGT 41060 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || || ||||| | || || || |||||||||| || || || | | Sbjct 41061 TGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAG 41120 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| ||||| || || ||| || |||| | || ||||| || |||| | Sbjct 41121 TGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATT 41180 Query 245388 G-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | || | ||||| | | | |||||||| |||||| |||||||||| ||| Sbjct 41181 GTGGACGTGGGG-TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAG 41230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315190175840