Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq254 116 3e-21 >seq254 Length=42645 Score = 116 bits (128), Expect = 3e-21 Identities = 297/439 (68%), Gaps = 15/439 (3%) Strand=Plus/Minus Query 122907 GAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGA 122965 |||||| || || ||| |||||||||| ||| ||||| | ||| |||| ||||| | Sbjct 41328 GAACGTCCCCAGCAGATGATCATGCGCGTGGCTCTAGGCATCCACAAGACGA-ACATC-A 41271 Query 122966 AAACGCGACC-GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCA 123024 | || || || |||||||| | ||||| |||||||| ||||| ||||| | |||| Sbjct 41270 AGGCGGCACTTGAGACTTACGAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCA 41211 Query 123025 CTTTGTTCGCCGCCGGCACG--AAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTT 123082 | ||||| || || || | || || || ||||||||||| || ||| | || | Sbjct 41210 CGCTGTTCAATGCTGGTACCCCACGT--CCACAATTGTCTTCGTGCTTCTTGTTGGCCAT 41153 Query 123083 GCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAA 123142 || || ||| || || || ||||| ||| || | || |||| || ||||| Sbjct 41152 GCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAA 41093 Query 123143 ATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCGCATCA 123201 | | || ||||| ||| | | ||||| || | ||| | | | ||| |||| Sbjct 41092 GTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAG-CTACTAACAGCTACATCC 41034 Query 123202 GAAGCACCGACGGAATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCC 123260 | |||| |||| ||| || ||| || ||||||||||||| | || | | Sbjct 41033 GCGGCACGAACGGC-TCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACG 40975 Query 123261 GTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAA 123317 | || |||| |||||||| || |||||||| || | | ||||| ||||| ||| Sbjct 40974 GCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAA 40915 Query 123318 CCGTGGCACGTTGATGTGT 123336 |||||||||| |||||||| Sbjct 40914 CCGTGGCACGCTGATGTGT 40896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991707818640