Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq102 102 3e-16 >seq102 Length=82559 Score = 102 bits (112), Expect = 3e-16 Identities = 376/585 (64%), Gaps = 8/585 (1%) Strand=Plus/Plus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 ||||| ||||| || || || || || || || | || | || || | || |||| Sbjct 77327 GTGCTGGTAGGCGGGTCCACGCGTATCCCCAAGGTGCAGCAATTGCTGACGGATTTTTTT 77386 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || ||| |||| | ||| | | || || || |||||||| || | |||||| || Sbjct 77387 CACGGGAAAGAACTGTTCAAGTCCATCAACCCGGACGAAGCTGTGGCGTTCGGTGCTACA 77446 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGAT-----GAAAAATTAGGAG-ATATTCTG 452077 ||||| || || ||||||| || | | ||| | || | | || || | ||| Sbjct 77447 GTTCAGGCGGCCATTCTAAGTGGGGCTGGTGACACCTCGTCCAAGTTGCAGGATCTGCTG 77506 Query 452078 TTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAAT 452137 || | || || | || ||||| || ||| | || || || |||||| | ||||| | Sbjct 77507 CTACTGGACGTGGCGCCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACA 77566 Query 452138 TTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT 452197 | || || || | |||||| ||||||| || || || || Sbjct 77567 CTGATCGCGCGTAACACCACAGTTCCTTCTAAAAAGTCGCAGACGTTCTCGACGTACTCG 77626 Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||| || ||||| ||||| ||||| ||||| ||||| | ||||| || || Sbjct 77627 GATAACCAGCCTGGTGTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGAC 77686 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| | ||| || | || | | | ||||| || |||| | || | || Sbjct 77687 AATCACCTACTGGGCAAGTTCAATTTGGACGGTATTCCGCCAATGCGCCGTGGTATACCG 77746 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || | |||| ||| | ||||| ||||||||||| |||||| || || || Sbjct 77747 CAAATCGATGTGACCTTCGATATCGATGCGAATGGTATTCTCAATGTGTCAGCCGTCGAG 77806 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 ||||| |||| || |||| || || || || || || || || ||| |||| | Sbjct 77807 AAATCGACTGG-CAAGGAGAACAAGATCACCATCACGAACGACAAGGGTCGTCTATCGCA 77865 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGA 452481 || || ||||| ||||||| || || || || |||||||| Sbjct 77866 GGACGAGATTGACCGCATGGTAGCAGAGGCTGATAAGTTCAAGGA 77910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975666911543672