Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq40 149 7e-31 seq53 105 8e-18 seq9 89.7 6e-13 >seq40 Length=145870 Score = 149 bits (164), Expect = 7e-31 Identities = 289/418 (69%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || | | || | || ||||||||| ||||||| Sbjct 65082 ATCTGCCGATCGAATCGACCAGGACGCAAAATGGCCTTGTCTAGAATATCGGCACGGTTC 65023 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | || |||| | || |||||| ||||| || || Sbjct 65022 GTACCGGCGAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 64966 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACC-ACCTGCCGAACGC 11670 |||||||| | || | ||||||||| |||||| | || | | |||| ||| Sbjct 64965 AGCTGGTTCAATGTGTTTTCACGCTCGTCGTTGCCGCCGGAAAAGTTACCTTTGCTACG- 64907 Query 11671 TTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | | | |||||||| || ||||| ||||| || |||||||| ||| || || || Sbjct 64906 TGCACGCGCAACAGCGTCGATTTCATCAATGAACACAATACACGGAGCGTTCGCTCGCGC 64847 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 || | ||| | ||||| |||||| || || ||||| ||||||||||||| ||| | Sbjct 64846 CTCCTTGAACAAGTCACGCACACGCGACGGACCCACACCGACGAACATCTCAATGAAATC 64787 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 || | || | |||||| ||| || || | | ||||||||| | ||| ||| || | Sbjct 64786 TGAACCGGAGATACTGAA-GAATGGCACGCTGGCCTCACCAGCCGTTGCTTTAGCCAGCA 64728 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || ||||| |||||||| | ||| | || || || || ||||||||| || || Sbjct 64727 GCGTTTTACCTGTACCAGGCGGTCCAACAAGCAGCGCACCCTTGGGGATCTTCGCCCC 64670 >seq53 Length=124841 Score = 105 bits (116), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||||||||| || |||||||| || || | ||||| || ||||||| |||||| | || Sbjct 21815 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 21756 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTG 168545 ||| | ||||| ||||||||||||||||| | ||| ||||| || ||| || || Sbjct 21755 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 21699 Query 168546 TGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || || || || | ||| |||||||| | || || ||||| || Sbjct 21698 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGT 21654 >seq9 Length=255281 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| || | |||||||| ||| |||||||| || ||||| || ||| Sbjct 48829 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 48770 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 48769 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 48710 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||||||||| || || || | |||||||| Sbjct 48709 CCCTCCACAGCTGCAAATGCCAGAAGACGCTC 48678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961025285200