Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq88 163 2e-35 >seq88 Length=94159 Score = 163 bits (180), Expect = 2e-35 Identities = 453/682 (66%), Gaps = 31/682 (5%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| || | ||| | |||||| ||||| || || || | ||||| Sbjct 5438 AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGG 5497 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 29909 | ||| || || | || | || | || || |||| || || ||| || || | || Sbjct 5498 ATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 5556 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||||||||| || || || ||||| |||||||| | || | |||||| | || || Sbjct 5557 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCA 5616 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||| | || || || ||||||||||||||| | |||| || || || || ||||| Sbjct 5617 CGACAATTCGCCATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT 5676 Query 30030 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085 | || || ||| || ||||| || ||| | || || | ||| |||| Sbjct 5677 ----CTCATTGAGATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGT 5732 Query 30086 TGTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 30141 | | | | || || ||| | || || ||||||||||| || | |||| Sbjct 5733 TCGTGCGCAATTTGTGGATCAC----CTCAGCAAGTTGATCCACCCCTTGTCCAGTGTAG 5788 Query 30142 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30201 ||||| ||| |||||||||| ||||| || || | ||||||||| || || || ||| Sbjct 5789 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGT 5848 Query 30202 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30261 ||||||||||| ||||||| || | || | |||||||| | |||| || || Sbjct 5849 CCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCA 5908 Query 30262 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30321 ||| | |||||||| | | |||||| ||| | | | || ||| || Sbjct 5909 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTA 5968 Query 30322 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30381 | ||||||||| | |||||| | || | |||| || || ||||| ||||| | | Sbjct 5969 ATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAAT 6028 Query 30382 GGAAAC----TGTCCCTTGAGGCCGTA---CATGGCCTGAGAACCAAACACGGACAAGAC 30434 || ||| | |||| | || | | | ||| ||||| |||||||| ||||| | Sbjct 6029 GGGAACACGTTATCCC-TCAGACTGAAGCGCAT---CTGAGCCCCAAACACCGACAA-AG 6083 Query 30435 TCCC-GTGCCCGTCCTGTCTCC 30455 |||| || ||||||| |||||| Sbjct 6084 TCCCTGTCCCCGTCCGGTCTCC 6105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408607470625082