Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 163 5e-35 seq254 145 1e-29 >seq9 Length=255281 Score = 163 bits (180), Expect = 5e-35 Identities = 492/754 (65%), Gaps = 21/754 (3%) Strand=Plus/Plus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || || ||||| |||| ||||| |||||||| ||| |||||| || |||| Sbjct 48376 ACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGA 48435 Query 25634 ACGAGAATCTGTGCGA-GAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 ||||||| ||| || | || || | || ||||| ||| | | || |||| || || Sbjct 48436 ACGAGAACCTG-GCTATGAACTTTAGCAATGAAGTACAGGTGCCTG-AGGCTCGTTGCTT 48493 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| ||||| || ||||| || || | ||||| |||||||| | ||| || || Sbjct 48494 CTACGGCTTCCAAATTGCCATTGAGAACATCCACTCAGAGGTGTACTC---GCTGCTCAT 48550 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 |||||||| | |||| | |||| || | ||| | |||| || ||| ||| Sbjct 48551 TGACACGTACATCAAGGACGCTGTGGAGAAGGACCACCTGCTGCGTGCAATTGAGACCAT 48610 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTA 25867 || | | | | ||||||| | ||||| | | ||| | || | | || | | Sbjct 48611 CCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGATGGTGCGACC-CGAAAGTGTCCT 48669 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 | | ||||| || | || ||||| ||||||||||| ||||| ||| || || | Sbjct 48670 CATACCCGGAGCGTCTTCTGGCATTTGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCT 48729 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 || ||||||||||||||||| || || |||||| || ||| ||| ||||||| Sbjct 48730 TTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACG 48789 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 ||||||| || | || || ||| | |||| ||| ||||| || ||| | ||| || Sbjct 48790 AGCTCATTAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCG---A 48846 Query 26048 ACTTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 | || | || || || | || || || || || ||| || |||||| || Sbjct 48847 AGCTGGT-GACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAG 48905 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 ||||| | |||||| | ||||||||| Sbjct 48906 ATCGAACACGAGTTTGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCG 48965 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCC 26226 |||||| |||| |||||||||| ||||| |||| ||||||| ||| || | || Sbjct 48966 CTCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCC 49025 Query 26227 AGACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | |||||| ||| | |||||||| |||| ||||| | || || | | || | Sbjct 49026 AAGATCTACA--ACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCA 49083 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||| |||||||| || ||| | || ||||| || Sbjct 49084 AGACTAACTTCTTCGAGAAGCGTGTGGGCGAGTA 49117 >seq254 Length=42645 Score = 145 bits (160), Expect = 1e-29 Identities = 484/751 (64%), Gaps = 53/751 (7%) Strand=Plus/Plus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA-----GA 221478 ||||| |||||||||||| ||||| |||||||||| ||| | ||||| ||| || Sbjct 40210 AGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAG-CTCACGCGCCTCCGGACTCTCGA 40268 Query 221479 A-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | | ||| ||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 40269 ACGCAAAGTCCATGAGGA-----TGAAAG-CGTCCGCAAGGCCCTGCACACCAATACCAA 40322 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | |||||||| | || || ||||| || |||||||||||| Sbjct 40323 CAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGA 40382 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| ||||| | ||||| || || || || || |||||||| || |||| Sbjct 40383 TGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGA 40442 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | || ||| || || || | || || ||| |||| Sbjct 40443 ATA---------CGGCGT---------TCTCAACGAACTTGGGGAGCGCCACGGACGCCA 40484 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| |||||||||||||| || ||||||| || | || || | ||||| Sbjct 40485 AGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCACAGCACAAGTTGC 40544 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 | | || || || |||| | |||||||||||||| ||||| ||||||||||| | Sbjct 40545 TCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATA 40604 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 ||| || || |||| ||||| | ||| || ||||||| | ||| || | | | Sbjct 40605 ACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAG 40664 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | | || ||| |||| ||| ||| || ||| Sbjct 40665 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAAC---------AGCG 40715 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | || |||| || || | ||||| ||| || ||| | | |||||| | || || Sbjct 40716 TCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAAC 40775 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | || | || |||||| || ||||| | |||||| || | Sbjct 40776 TCCA---CTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCAT 40832 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | | || ||| ||| || | ||| || | ||||||||| |||| Sbjct 40833 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACT 40892 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 |||| | |||||||||||||| |||||||| Sbjct 40893 CAAACACATCAGCGTGCCACGGTTCCAGATA 40923 Score = 100 bits (110), Expect = 5e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 221050 CAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCAT 221109 ||| | || | |||||| ||| | ||| | |||| ||| |||| | || | || Sbjct 39841 CAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAG 39900 Query 221110 GTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | | | ||| ||||||| ||||| | | | ||||| |||||| | Sbjct 39901 GTACTTGTTCACGA-TGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGG 39959 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 ||||||||||||| |||||| || || |||||||| ||||| || || ||||| | Sbjct 39960 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 40019 Query 221229 GTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 | || ||||| || |||||||| ||| Sbjct 40020 GCGCGACCAGGAGCGAATTGCGCAGGCCG 40048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821184120960