Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 194 3e-43 seq45 147 3e-29 seq33 134 2e-25 seq254 87.8 3e-11 >seq9 Length=255281 Score = 194 bits (214), Expect = 3e-43 Identities = 242/328 (74%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| |||||| ||||| |||||||||| || Sbjct 49132 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGA 49073 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---CCG 794009 ||||||| |||||||| |||||||| | | | || || ||| | || || Sbjct 49072 GAGATCATGTCCATCCAGTCAAACGGGTT---CTTGACGTTGTAGATCTTGGACACACCA 49016 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||| || ||||| |||||||||||||||||||| || | |||| Sbjct 49015 AGCGAATACAGCAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTC 48956 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| ||||| |||||||| | ||||||| || || Sbjct 48955 ATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCG 48896 Query 794130 TCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || ||| |||| | || |||| | || | ||||| || ||| ||| ||| | Sbjct 48895 TCACGGATAATCT-CGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAA 48837 Query 794189 CAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||| || |||||||| |||| |||| Sbjct 48836 CAGACAAGCAAAGTCTGTGTGCATACCT 48809 Score = 179 bits (198), Expect = 6e-39 Identities = 240/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || ||||| || | |||||| |||| || || |||||||| || ||||| Sbjct 48812 ACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTT 48753 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || ||||||||| ||||| ||||| || || ||||| Sbjct 48752 CTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAA 48693 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGC 794516 | | || ||||| | | | | || |||| || | ||| | | ||| Sbjct 48692 TGCCAGAAGACGCTCCGGGTATGAGGACA------CTTTCGGGTCGCACCATCTTAGCGC 48639 Query 794517 CCA-CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| ||| ||||| || |||| | || | || || || || || | |||||||||| Sbjct 48638 CCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCT 48580 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| || | |||||||| ||| ||||| ||||| |||||||| |||||||||||||| Sbjct 48579 TCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGT 48520 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||| || |||||||| || ||||| Sbjct 48519 TCTCAATGGCAATTTGGAAGCCGTAGAAGCA 48489 Score = 131 bits (144), Expect = 3e-24 Identities = 163/220 (74%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 796186 GCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATA 796245 ||||||||||| ||||||||| || |||||||| || ||||| | |||||||||||| Sbjct 48448 GCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATG 48389 Query 796246 AAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCG 796302 ||||||||||||| ||| |||| |||||| || | |||| | | ||| Sbjct 48388 AAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGT---CCTTGAGGTCGTGTACCAAGTCC 48332 Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 | ||| || || ||||| ||| |||||| ||||| |||||||||| ||| | ||| | Sbjct 48331 AGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGCCACA--CGTCGT 48274 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 | | |||||||||| || || ||||| || ||||| || Sbjct 48273 GCTCCTGGATGGGGAATAGCACGAAGCGGTTCGGGTTTTC 48234 >seq45 Length=135798 Score = 147 bits (162), Expect = 3e-29 Identities = 188/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || ||||||||| |||| || || || ||| Sbjct 27816 TGAACTTGGTCACAGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCAAGCTCACCAGGCA 27757 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||||| || | ||| |||||| | Sbjct 27756 GCATGAGACGCACAGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 27697 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 27696 GCGACAGCTTGCCGGCCTCCGACGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 27637 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| || ||||||||||| |||||||||| Sbjct 27636 TGATCGACATGCCCCGCTTGCTGATACCCGTCTCAGGGTGCACCTGACGCAGCACCTTGT 27577 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 27576 AGATGTAGGTGGAGTACGA 27558 >seq33 Length=160117 Score = 134 bits (148), Expect = 2e-25 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 159554 TGAACTTGGTCACAGCCTTCGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCCGGGA 159495 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 159494 GCATGAGACGCACAGCAGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 159435 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| |||||||| | | ||||| |||| |||||||||| |||||||||| Sbjct 159434 GCGACAGCTTACCGGCCTCCGACGCAATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 159375 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 159374 TGATCGACATACCGCGCTTGCTGATACCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 159315 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 159314 AGATGTAGGTAGAGTACGA 159296 >seq254 Length=42645 Score = 87.8 bits (96), Expect = 3e-11 Identities = 349/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| ||||||||||||| || || || ||||| ||||||||||| || Sbjct 39562 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 39621 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATT---CGG 2069369 |||||| || ||||||||| ||||||||| || | || | || ||| Sbjct 39622 CTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAG---CTTGCTTTTTGTCGG 39678 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 |||| || | ||| |||||||| ||||| || |||| | || || || | Sbjct 39679 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 39738 Query 2069430 CATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || ||| | || || | | | || ||||||||| |||||| || |||||| Sbjct 39739 CAGGTCCAGAATCGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGATG 39796 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCG 2069546 || ||| | | | ||| | | |||||||| || | | | | | || | Sbjct 39797 TGGTCCGGAA-----TGGAGCTCACATTC-TGCACCGAACCGCCGTCATTCAA-GATCTG 39849 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGT 2069605 || || | || || | ||||| || || | |||| || | | | ||||| || Sbjct 39850 GTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCA-GCTCATTCATCAGGTACTTGT 39908 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | |||||| || |||| ||||||||||| |||| ||||| |||| | Sbjct 39909 TCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTAGAGGTGAACGGTT 39968 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 || | |||| | || || |||||||| | ||| | ||||| ||||| |||| || | Sbjct 39969 CGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCA 40028 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | ||||| ||||||||||||| || |||| | || || || |||||||||| Sbjct 40029 GGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCA 40086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916030034142926