Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq51 104 1e-17 >seq51 Length=127362 Score = 104 bits (114), Expect = 1e-17 Identities = 321/493 (65%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 66277 ATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 66336 ||||| ||||| ||| || | ||| || | |||||||||||| | ||||| ||| |||| Sbjct 38254 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 38195 Query 66337 AACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 66396 | || || ||||| || | |||||| | || |||| |||| || || Sbjct 38194 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 38135 Query 66397 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 66454 || ||| || | ||||| | | ||||| | || ||| || || || || |||| Sbjct 38134 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 38077 Query 66455 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 66514 | || ||||| || || || || || ||| || | | ||||| |||||||||||| Sbjct 38076 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 38017 Query 66515 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 66571 || || ||||||||||||| || | | |||| ||||| || | | ||| Sbjct 38016 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 37960 Query 66572 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 66631 | |||||| | ||| ||||| | |||| | || || | |||| || Sbjct 37959 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 37903 Query 66632 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 66691 | || || | ||||| | | |||||| || || || | ||| |||| |||| | Sbjct 37902 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 37843 Query 66692 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACA 66751 || || || ||||| ||| ||| |||||| || || ||||| | ||||||| Sbjct 37842 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 37783 Query 66752 AGCTGGCCCCGCC 66764 |||||||| |||| Sbjct 37782 AGCTGGCCTCGCC 37770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243763557103972