Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq254 152 6e-32 seq9 114 2e-20 >seq254 Length=42645 Score = 152 bits (168), Expect = 6e-32 Identities = 454/692 (66%), Gaps = 9/692 (1%) Strand=Plus/Plus Query 111482 TCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || |||||||| ||| | || ||| | ||||| || |||| || |||||||| | | Sbjct 40718 TCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACT 40776 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| | ||| |||| || ||||||||||| || || || | |||||| | | || Sbjct 40777 CCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAA 40836 Query 111601 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 | || | | ||| | || || ||| ||| ||||| || | || | |||||| | Sbjct 40837 CAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAA 40895 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 111716 | ||| |||||||| || || ||||| | || | |||||||| || || ||| Sbjct 40896 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 40955 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 | || | || || || || || ||||||| || || ||||| || || || || | | Sbjct 40956 CCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 41015 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATC 111835 | || || || || || || || | ||| | |||| | | || || || Sbjct 41016 ACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGCTCGGATGTTGTGCATACTGATG 41074 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||||| || || |||||||| ||||| |||||||| | ||||| |||| || || Sbjct 41075 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41134 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||||| |||| |||| | | |||||| |||| || || | ||| ||| Sbjct 41135 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41194 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 ||||||||||| || || || || ||||| |||| | ||| ||||| ||||| Sbjct 41195 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41254 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | | | | |||| | ||||||||| | || || ||||||| ||| Sbjct 41255 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41314 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTT 112135 | ||| || ||||| | |||| | || || ||||| | | |||| || || Sbjct 41315 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 41374 Query 112136 TTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||| ||| | | ||| |||| || Sbjct 41375 TTAAAGCCAAAATAATCGTATTCAAAGTCTCG 41406 >seq9 Length=255281 Score = 114 bits (126), Expect = 2e-20 Identities = 329/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 49117 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 49058 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 49057 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 48998 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 48997 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 48938 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 48937 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 48878 Query 122611 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 48877 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 48823 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| ||||| || ||| || || || ||||||| ||||| ||||||| Sbjct 48822 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 48763 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 48762 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 48703 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTC 122844 || ||||| || | ||| || || | | | ||| || ||||| | || ||||| | Sbjct 48702 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 48644 Query 122845 ATTGCCCATTTCGCCTTCTT 122864 | ||||| |||||||||| Sbjct 48643 AGCGCCCAACTCGCCTTCTT 48624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016032286400