Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq254 152 6e-32 seq9 141 1e-28 >seq254 Length=42645 Score = 152 bits (168), Expect = 6e-32 Identities = 461/709 (65%), Gaps = 5/709 (1%) Strand=Plus/Plus Query 118790 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 118849 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 40552 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 40611 Query 118850 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCAC 118909 ||| |||||||| | || | | |||||||| ||| | | ||| | Sbjct 40612 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGAT 40671 Query 118910 AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 118969 || | ||| || || || ||||||||| | || | || ||||| || || Sbjct 40672 TGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCC 40731 Query 118970 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 119029 | | ||| | || || || |||| | || ||||| | | ||| | ||| | Sbjct 40732 CCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGC 40791 Query 119030 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGC 119088 ||| || ||||||||||| || || || | ||| || || |||| | || || || Sbjct 40792 CTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACG 40851 Query 119089 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 119148 | || || | | || || || |||| ||||| || || | | ||| ||||||| Sbjct 40852 GTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCC 40910 Query 119149 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 119205 |||||||||| || | ||| | ||| ||||| || || ||| |||||| || || | Sbjct 40911 ACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAAC 40970 Query 119206 TCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCC 119265 || || ||||||| || || ||||| || ||||| || | ||| ||| || || | Sbjct 40971 GTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGC 41030 Query 119266 CCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 | || || ||| | |||| || | ||| || || ||||| || ||||||| Sbjct 41031 CGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCC 41090 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| ||| |||| | ||| || | || || || || || |||||| ||| Sbjct 41091 ACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCT 41150 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | || | | |||||| |||| ||| || | || |||||||| ||||| || | Sbjct 41151 GCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCG 41210 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTC 119494 | || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 41211 TGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41259 >seq9 Length=255281 Score = 141 bits (156), Expect = 1e-28 Identities = 347/521 (67%), Gaps = 14/521 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 49117 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 49058 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| ||| | || | ||| |||| | | || || || Sbjct 49057 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 48998 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 48997 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 48938 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | ||| | | || || | |||||| || || | || |||| Sbjct 48937 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 48878 Query 129968 ATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG-----CAAAC 130021 | | | ||| | || ||| || ||| |||| | || | |||| Sbjct 48877 A----CACGCTGCTCCGGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAAGCAAAG 48824 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||| || ||||| ||||| || || ||||||| |||||| |||||| Sbjct 48823 TCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATG 48764 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | ||||| ||||| ||||||||||| |||||| Sbjct 48763 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCC 48704 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAAACCACTT 130200 ||| || || || | |||||||| | | ||| | ||||| | || |||| | Sbjct 48703 ACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCT 48645 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 | |||||| |||||| || | |||||||| ||||| Sbjct 48644 TAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 48604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419476285040