Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 4e-13 seq418 89.7 2e-12 seq254 89.7 2e-12 >seq25 Length=191820 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 114352 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 114411 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 114412 CCCTGCTTCTCCA 114424 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 115152 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 115211 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 115212 CCCTGCTTCTCCA 115224 >seq418 Length=23125 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 4040 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 4099 Query 74548 TCGGGCA 74554 ||||||| Sbjct 4100 TCGGGCA 4106 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 5201 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 5260 Query 74548 TCGGGCA 74554 ||||||| Sbjct 5261 TCGGGCA 5267 >seq254 Length=42645 Score = 89.7 bits (98), Expect = 2e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 206444 CACACTGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCAT 206503 ||| |||||| | || || || || | ||||| || | ||||| || || || || | Sbjct 40953 CACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGT 41012 Query 206504 TAGAAGTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTA 206563 | || | || || || || | || | ||| ||| ||| || || || ||| | Sbjct 41013 TGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGA 41072 Query 206564 ATCCAATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTC 206623 ||||| ||||||||||| || || || ||||| | ||| | || | |||||| | Sbjct 41073 TGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGC 41132 Query 206624 CATCAACACTATCACTTTCCATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCG 206683 | |||| | ||| | ||| || | || || || ||| |||||||| ||||| | Sbjct 41133 CTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGG 41192 Query 206684 TTCCAGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATATTTTTGAGACAT 206735 | |||||||| || | || || || || || || || ||||||| ||||| Sbjct 41193 TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACAT 41244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515214911523302