Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq88 156 3e-33 >seq88 Length=94159 Score = 156 bits (172), Expect = 3e-33 Identities = 449/679 (66%), Gaps = 25/679 (4%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || | || | |||||| ||||| || || || | ||||| Sbjct 5438 AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGG 5497 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 29982 | ||| || || | || | || | || || |||| || || ||| || || | || Sbjct 5498 ATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 5556 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||||| || || || ||||| |||||||| | || | |||||| | || || Sbjct 5557 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCA 5616 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||| | || || || ||||||||||||||| | ||| || || || || ||||| Sbjct 5617 CGACAATTCGCCATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT 5676 Query 30103 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30158 | || || ||| || ||||| || ||| | || || | ||| |||| Sbjct 5677 ----CTCATTGAGATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGT 5732 Query 30159 TGTTCCTGA---TGAGGTCCACGGCGTTTTGCA-GCTGATCCACCCCCATCCCCGAGTAG 30214 | | | | || || ||| | ||| | ||||||||||| || | |||| Sbjct 5733 TCGTGCGCAATTTGTGGATCACCTCA----GCAAGTTGATCCACCCCTTGTCCAGTGTAG 5788 Query 30215 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30274 ||||| ||| |||||||||| ||||| || || | ||||||||| || || || ||| Sbjct 5789 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGT 5848 Query 30275 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30334 ||||||||||| ||||||| || | || | |||||||| | |||| || || Sbjct 5849 CCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCA 5908 Query 30335 TTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394 ||| | |||||||| | | |||||| ||| | | | || ||| || Sbjct 5909 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTA 5968 Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30454 | ||||||||| | |||||| | || | |||| || || ||||| ||||| | | Sbjct 5969 ATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAAT 6028 Query 30455 GGAAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 30510 || ||| | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 6029 GGGAACACGTTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 6086 Query 30511 C-GTGCCCGTCCTGTCTCC 30528 | || ||||||| |||||| Sbjct 6087 CTGTCCCCGTCCGGTCTCC 6105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300327819128