Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq88 163 3e-35 >seq88 Length=94159 Score = 163 bits (180), Expect = 3e-35 Identities = 459/697 (66%), Gaps = 11/697 (2%) Strand=Plus/Plus Query 6505 GGGGAACGGTCG--GGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGG 6562 ||| || ||||| ||| | |||| ||||| || | ||| |||| |||||||||||| Sbjct 5413 GGGAAATGGTCGCGGGGTGCGCGTT--AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGG 5470 Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGA 6622 || | || ||||| || | | || | | || |||| ||| || | || || Sbjct 5471 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGATTTCAAACCAGCCACTTGG 5530 Query 6623 GCGATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCAT 6681 || | || || ||| || || || ||||| || |||||||||||||| || | ||||| Sbjct 5531 GCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCAT 5589 Query 6682 GTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCA 6741 ||| | || || || || | ||||| |||| || |||| ||| ||||| || || || Sbjct 5590 GTCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCCATCCGCCACGTAAAACTGACA 5649 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 | |||| || || || ||||||||| | |||||| ||| |||||||| ||| Sbjct 5650 AAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATCTGCCGGATTCCACGCAGACAA 5709 Query 6802 CACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGT 6860 ||| |||| | ||| |||||| ||| ||| |||||| | | || || || | Sbjct 5710 CACAATCCGACGGTCGGTCGGGTTCGTGCGCAATTTGTGGATCACCT-CAGCAAGTTGAT 5768 Query 6861 CCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCC 6920 || | || ||||| | ||||| || | | || |||| || |||||||| | || Sbjct 5769 CCACCCCTTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCC 5828 Query 6921 ACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGT 6980 ||||||| || || || || |||| ||| || | |||| || | | || | ||| Sbjct 5829 ACTGGAATCCATAAACTGGTCCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGT 5888 Query 6981 CCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCT 7040 ||| | | ||||| || || | | |||||||| | | || | ||| | Sbjct 5889 CCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTAT 5948 Query 7041 TGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACA 7100 | |||| |||| || | ||||||||| | ||||| |||| || ||||| | | Sbjct 5949 GCGCACTCGTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAATA 6008 Query 7101 CACGTTTCGTCGTCAGCAGCGGAAATTCG---CCCCGAAGGTTGTATCGGGCCTGTGTGC 7157 | | || ||||||| || || || || ||| || || | || ||| | | Sbjct 6009 CTCTCTTAGTCGTCAACAATGGGAACACGTTATCCCTCAGACTGAAGCGCATCTGAGCCC 6068 Query 7158 CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 | ||||| || | ||||| ||||| |||||||| || Sbjct 6069 CAAACACCGACAAAGTCCCTGTCCCCGTCCGGTCTCC 6105 Score = 163 bits (180), Expect = 3e-35 Identities = 459/697 (66%), Gaps = 11/697 (2%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| ||||| ||||| | || ||||| || | ||| || | || || Sbjct 6105 GGAGACCGGACGGGGACAGGGACTTTGTCGGTGTTTGGGGCTCAGATGCGCTTCAGTCTG 6046 Query 34211 CGGGG---CGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| || || || || ||||||| || | || | ||||| || |||| ||| Sbjct 6045 AGGGATAACGTGTTCCCATTGTTGACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAG 5986 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || | ||||||||| | || |||| |||| | | ||| | || | Sbjct 5985 GAATTACTGTGGTTCATTAGTGGGGATACGAGTGCGCATACGCTGCAGCAGAAGGACATT 5926 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||| | | || || ||||| | | |||||| | || | | || || Sbjct 5925 CATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGACAGTTGTGGACTGCAGTCAAGG 5866 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | || ||| |||| || || || || ||||||||| | |||||||| || |||| Sbjct 5865 GAAGTAGGAGACCTGGGACCAGTTTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTAC 5806 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | ||||| || | ||| || || || | | |||||| | Sbjct 5805 ACGGATATGCATGCAGACTACACTGGACAAGGGGTGGATCAACTTGCTG-AGGTGATCCA 5747 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 || ||| |||||| ||| | |||| ||| ||| |||||||| ||| || Sbjct 5746 CAAATTGCGCACGAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCGGCAGA 5687 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 |||| | ||||||||| || || || |||| | || || || ||||| ||| |||| Sbjct 5686 TCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATGG 5627 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 || |||| ||||| | || || || || | |||||||| | || ||||||||||| Sbjct 5626 CGAATTGTCGTGCCAAATGTACCAGCGTTCAGCTGACATGGGCCTCGGCGTGCCGTTCAA 5567 Query 34687 CATTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 ||| || ||||| || || || ||| || || | || || || | || ||| ||| Sbjct 5566 CATCGCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAATCTG 5508 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805 | || | | || | | || ||||| || | |||||||||||||| |||| ||| | Sbjct 5507 GCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACATAGAGCCGCTTC 5448 Query 34806 GGATCCAGCTGCAACGAGAGCCC--CGACCGTTCCCC 34840 || ||||| |||| | ||| ||||| || ||| Sbjct 5447 AGAAGCAGCT--AACGCGCACCCCGCGACCATTTCCC 5413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251002928480