Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq88 96.9 3e-15 >seq88 Length=94159 Score = 96.9 bits (106), Expect = 3e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 || ||||| ||||| |||| || || || ||||| ||||| | || || ||||| ||| Sbjct 5450 AGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 5509 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTAT-GTCAACAAACTGTAGCTGGCTACATT 118586 | | | | || | || || || | || || |||| | || ||||| | || Sbjct 5510 GATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 5568 Query 118587 AAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCC 118646 || || || || || |||||||| ||||| | |||||||| |||||| || | || || Sbjct 5569 GAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCC 5628 Query 118647 GTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTG 118706 | || || |||||||||| | ||||||||||| ||||| |||| | | || | Sbjct 5629 ATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCATCTCATTGAGATC 5688 Query 118707 GGCAGGATTCCAGGC 118721 || |||||||| || Sbjct 5689 TGCCGGATTCCACGC 5703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414466525379176