Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq534 187 6e-42 seq987 145 2e-29 seq844 132 1e-25 seq624 120 7e-22 seq519 93.3 1e-13 seq254 86.0 1e-11 >seq534 Length=15242 Score = 187 bits (206), Expect = 6e-42 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| |||||||||||| | ||||| | |||||| | | Sbjct 8525 AACTTTATATTTAATTTTTAGTGCTTTTTCTGGTATTGTTGGTACAACATTTTCACTTTT 8584 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| |||||| || | |||||| ||| | || Sbjct 8585 AATTCGTATGGAATTATCACAACCAGGTAATCAAATTTTAATGGGTAATCATCAATTATA 8644 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || ||| ||||||| ||||| ||| ||||| | || || || |||||||| | | | Sbjct 8645 TAATGTAATTGTTACGGCACATGCTTTTATTATGGTATTTTTCTTAGTTATGCCTGCTTT 8704 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct 8705 AATTGGTGGCTTTGGTAATTGGTTTATTCCTTTAATGATAGGTGCTCCAGATATGGCTTT 8764 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || ||||| |||||||| ||| |||| || || ||||| Sbjct 8765 TCCTCGTATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 8812 Score = 107 bits (118), Expect = 5e-18 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| |||||||| || |||||||||||||| | | |||||| ||||||||||| Sbjct 9209 TTCTGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCGCCTGA 9150 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 9149 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 9106 Score = 96.9 bits (106), Expect = 8e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| || ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 4415 TAGGTGTCACTAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 4474 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 4475 GTAACATGATGTATAGGGTCTGACAC 4500 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||| || || ||||||||||| | || || | |||||| Sbjct 9031 AAAGGTAATCTATGAAAACTTAAGCCTGGAGCTCTCATATTATAAATAGTTGAAATAAAA 8972 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| || ||||| || || | | |||||||||||| || |||||||| Sbjct 8971 TTAATAGCACCTAACAGTGAAGACATTCCGGATAAATGTAAACTAAAAATAGCTAAATCT 8912 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || || |||||||| || || Sbjct 8911 ACCGAAGGTCCTGAATGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCT 8855 Query 371542 GT 371543 || Sbjct 8854 GT 8853 >seq987 Length=4295 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 4 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 63 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 64 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 123 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 124 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 183 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 184 TTGCCCGTCA 193 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 4292 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 4233 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 4232 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 4173 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 4172 TGGATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTC 4113 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 4112 TTGCCCGTCA 4103 >seq844 Length=6061 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 4926 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCA 4985 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| |||||||| Sbjct 4986 GCTTGAGTTTCAATAATAGGTAATGCAGTTAAAGAACCACCACCAATTTTTTTATT 5041 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 4025 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 3966 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| || | ||||| ||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 3965 CCAAACTTTTTTAAAGG-CAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 3907 Query 6865 GTAAT 6869 | ||| Sbjct 3906 GCAAT 3902 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 3338 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 3397 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 3398 GACTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 3457 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 3458 AACGCGTTAGCT 3469 >seq624 Length=11309 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| |||||||| || ||| Sbjct 8637 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCC 8578 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 8577 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 8518 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 8517 ATGGTCTTGCCCGTCA 8502 >seq519 Length=15923 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 134 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 75 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 74 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 15 Query 225612 TTCCTTGTCTTGGA 225625 |||||||||||||| Sbjct 14 TTCCTTGTCTTGGA 1 >seq254 Length=42645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 193523 GGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGAT 193581 |||||| ||||| | ||||| |||| |||| ||| || ||| | ||||| | || Sbjct 40591 GGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAA 40650 Query 193582 GCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGT 193641 ||| || | |||||| || | |||| | | ||| ||||| | ||||||||| || Sbjct 40651 -CCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAA 40709 Query 193642 ACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAA 193701 |||| ||| || || | ||| || |||| ||||||||||| || || || || | Sbjct 40710 ACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGA 40769 Query 193702 AGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTC 193747 | | |||||| | |||| ||||| | ||||||||| || || Sbjct 40770 ACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATC 40815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192500121891596