Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq88 122 7e-23 >seq88 Length=94159 Score = 122 bits (134), Expect = 7e-23 Identities = 428/666 (64%), Gaps = 23/666 (3%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || | ||||| ||||| ||||| ||||| || | |||||| ||| || || Sbjct 5450 AGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGGATAAATTCGCCA 5509 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTAGCTGGCGATGTT 29766 | || | || | || || |||| || || ||| || || | || ||||||||||| Sbjct 5510 GATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTT 5568 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || ||||| ||||| |||||||| |||| | |||||| | |||||||| | || || Sbjct 5569 GAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCC 5628 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 || |||||||||||||| ||||| || || || || || ||||| | | Sbjct 5629 ATCCGCCACGTAAAACTGACAAAACATG---TGACATGGTGGCAGCGCCATCTCATTGAG 5685 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---T 29940 ||| || ||||| ||| ||| | || || | ||| ||||| | | | | Sbjct 5686 ATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGTTCGTGCGCAATTT 5745 Query 29941 GAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNN 29999 | || ||| | || || ||||||||||| || | |||||||| Sbjct 5746 GTGGATCAC----CTCAGCAAGTTGATCCACCCCTTGTCCAGTGTAGTCTGCATGCATAT 5801 Query 30000 NNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30059 | || || | ||||||||| || || || |||||||||||||| Sbjct 5802 CCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGTCCCAGGTCTCCTA 5861 Query 30060 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 ||||||| || | || | |||||||| | |||| || || ||| | ||||||| Sbjct 5862 CTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGA 5921 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| ||| | | | || ||| || | ||||||||| | Sbjct 5922 TATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTAATGAACCACAGTA 5981 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30235 |||||| | || | |||| || || ||||| ||||| | | || ||| | | Sbjct 5982 ATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAATGGGAACACGTTAT 6041 Query 30236 CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCC-GTGCCTGTCCT 30294 ||| | || | | | | | ||||| |||||||| ||||| | |||| || || |||| Sbjct 6042 CCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCCCTGTCCCCGTCCG 6099 Query 30295 GTCTCC 30300 |||||| Sbjct 6100 GTCTCC 6105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406153131468124