Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq88 152 4e-32 >seq88 Length=94159 Score = 152 bits (168), Expect = 4e-32 Identities = 448/679 (66%), Gaps = 25/679 (4%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || | ||| | |||||| ||||| || || || | ||||| Sbjct 5438 AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGG 5497 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 27248 | ||| || || | || | || | || || |||| || || ||| || || | || Sbjct 5498 ATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 5556 Query 27249 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308 ||||||||||| || || || ||||| |||||||| | || | |||||| | || || Sbjct 5557 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCTGAACGCTGGTACATTTGGCA 5616 Query 27309 CGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||| | || ||||| |||||||||||||| | ||| || || || || ||||| Sbjct 5617 CGACAATTCGCCATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCAT 5676 Query 27369 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 27424 | || || ||| || ||||| || ||| | || || | ||| |||| Sbjct 5677 ----CTCATTGAGATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGGT 5732 Query 27425 TGTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 27480 | | | | || || ||| | || || ||||||||||| || | |||| Sbjct 5733 TCGTGCGCAATTTGTGGATCAC----CTCAGCAAGTTGATCCACCCCTTGTCCAGTGTAG 5788 Query 27481 TCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGT 27540 ||| | ||| |||||||||| ||||| || || | ||| ||||| || || || ||| Sbjct 5789 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTGGT 5848 Query 27541 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 27600 ||||||||||| ||||||| || | || | |||||||| | |||| || || Sbjct 5849 CCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATCCA 5908 Query 27601 TTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 27660 ||| | |||||||| | | |||||| ||| | | | || ||| || Sbjct 5909 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGCGTATGCGCACTCGTATCCCCACTA 5968 Query 27661 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 27720 | ||||||||| | |||||| | || | |||| || || ||||| ||||| | | Sbjct 5969 ATGAACCACAGTAATTCCTCCGCCACACCTCTCCAGAATACTCTCTTAGTCGTCAACAAT 6028 Query 27721 GGAAAC----TGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 27776 || ||| | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 6029 GGGAACACGTTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 6086 Query 27777 C-GTGCCCGTCCTGTCTCC 27794 | || ||||||| |||||| Sbjct 6087 CTGTCCCCGTCCGGTCTCC 6105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498040147454