Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq987 136 3e-27 seq624 131 1e-25 seq275 100 2e-16 seq519 95.1 9e-15 seq16 91.5 1e-13 >seq987 Length=4295 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 6 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 65 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 66 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 125 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| || | ||| || ||||| Sbjct 126 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 185 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| ||||| ||||| Sbjct 186 GCCCGTCAGTGTCTTCACAAAGATCTGCAT 215 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 4290 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 4231 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 4230 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 4171 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||| | | ||||| || | ||| || ||||| Sbjct 4170 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 4111 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| ||||| ||||| Sbjct 4110 GCCCGTCAGTGTCTTCACAAAGATCTGCAT 4081 >seq624 Length=11309 Score = 131 bits (144), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 8669 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8610 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 8609 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 8550 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct 8549 --CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8492 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 8491 AAAGATCTGCATGAT 8477 >seq275 Length=40207 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||||||||||| ||||||||||| || | Sbjct 32013 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 31954 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| || || ||||||| ||||||||| || Sbjct 31953 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 31901 >seq519 Length=15923 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 122 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 63 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 62 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 6 >seq16 Length=215431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 113 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 54 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 ||||||||| ||||| ||||||| ||||||||| || | || | ||||||| Sbjct 53 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981476062978