Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq379 136 8e-27 seq391 93.3 9e-14 >seq379 Length=29123 Score = 136 bits (150), Expect = 8e-27 Identities = 670/1051 (64%), Gaps = 49/1051 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 17992 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCGGTCTCGTCGAG 18051 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| |||||||||||||||||| || || |||||||| || | |||||| || || Sbjct 18052 GTGAGACTCGATGTGGTGGAAAGCGTGTTGGGCCACGTAGGCGAAACGCATGGAAGGGTG 18111 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || || | |||| || | | ||||| |||| ||| || | ||| Sbjct 18112 CTTCCACACTTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATCTTGATCATGGTAGA 18171 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATAC-CTGGGCAT 319228 || || |||||||| ||| | ||| |||| | | || | | | | | || Sbjct 18172 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATAC---GGCTCGACAAAGCGCACGTCAC 18228 Query 319229 T--CACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 319285 | | ||||| | | || || || || |||| | | | ||| ||| | Sbjct 18229 TGAAATGTTGTTGATCGACGGCTTCGGGGTGCCAGGGTACTGGTA-CGAACAGTTCGTCA 18287 Query 319286 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAAC- 319344 ||||||| |||| |||| | | ||||| || ||||| |||||| Sbjct 18288 AACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGGAACG 18347 Query 319345 ----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTT 319400 | ||||| ||| | ||| || ||||||| | | || || || Sbjct 18348 TGAACTTCACGTTGTC--AGACTC---CAGCTCGTAGTAGGCCTTGGCCTCAGGCTTCTG 18402 Query 319401 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 319460 || |||||| | || || || |||||||| |||||||||| | || ||||| || Sbjct 18403 CTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACG---AGTCTCGTAGTG 18459 Query 319461 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 319520 || || ||| || || | ||||||||| || |||||||| ||||| || | || || Sbjct 18460 AATGATGTTGGTACAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACCATGATGCTCGT 18519 Query 319521 AACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATG 319580 |||| | ||| | ||||||| | || ||| ||||| ||| | || Sbjct 18520 CACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTAACATCCAAGTG 18579 Query 319581 GTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGC 319640 ||| |||||||| |||||||||| | | || ||| | ||||| ||||| ||||| | Sbjct 18580 GTTCGTCGGCTCATCAAGAAGCAAGATGTCGGCCTTCTGCAGCATGGCACGAGCAAGTTC 18639 Query 319641 GAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAATATC 319700 |||||||| ||||| || || ||||| ||| | || ||| || || || Sbjct 18640 AAGTTTCATCTTCCAACCACCCGAAAGGGTGCCTA------CACCCTGGGCCTGCATCTC 18693 Query 319701 -------AAAGCCAACCGATT-CTAGAGTAGTTACG-ATCTTTTCACGAGACCAAATGTT 319751 ||| ||| || || | ||||| || | | || ||||||| | |||| Sbjct 18694 CGGGGTGAAACCCA--CGCTTCCGAGAGT-GTCCTGCACCTCGTCACGAG---GAGTGTT 18747 Query 319752 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCC 319811 ||| | | ||||| |||||||| | | | | | || || || | Sbjct 18748 ---CTTGAGGTCCTCATCCACCAGGATGAAGTCCACCACGGACAACTCAGCCTCCGAAGC 18804 Query 319812 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCTTCA 319869 | || | ||| || ||| | |||| |||| | | | || |||||| || || Sbjct 18805 CTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGACCGGC--TGGGGAAGCCCTCG 18862 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 ||||| ||||| |||||||||||||| || || ||||| ||||| || || ||| Sbjct 18863 AGCTGACCGTTGGAGATAGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGGCCGCAC 18922 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| |||| || || |||||| | || | ||||||||| ||||| | ||| Sbjct 18923 AGACCGTAACGGTGGCCACGCTTCAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCA 18982 Query 319990 CCATATGCCAGAGAAAATTCACAATCACACA 320020 ||||| || || || || || || | |||| Sbjct 18983 CCATAGGCGAGCGAGAACTCGCAGTTGCACA 19013 >seq391 Length=25901 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/194 (72%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| ||| || ||| | || |||||||| ||||| ||||||||| | Sbjct 605 CTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT- 547 Query 230506 TTTGTTGCACT---TGGTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 |||| ||| ||| | || ||| | |||||| |||||||| || | | || Sbjct 546 ---GTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGAT 490 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TC 230620 ||| | || ||||| || || |||||||||||||| || ||||| || | || || || Sbjct 489 GGACATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTACTC 430 Query 230621 AGAGGCCTGGTGTG 230634 ||| |||||||| Sbjct 429 CAAGG-CTGGTGTG 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057748900776830