Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq391 116 4e-21 >seq391 Length=25901 Score = 116 bits (128), Expect = 4e-21 Identities = 303/459 (66%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 710 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGA 769 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || || || | ||| || || | | ||| || || | Sbjct 770 AGCTCAGACCAGGCATGAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 829 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG---CGT 17132 | ||||| || ||||| |||| || ||||| | | || || | ||| | || || Sbjct 830 AGAAGAAAATGCCCTCCACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGC 889 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || ||| || || |||| ||| || | || | ||| ||||| | Sbjct 890 GAGGGTCACA---CCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCT 946 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | | | || || ||| ||| | || || || ||||| || | Sbjct 947 CGATGGCACGCAGCAGGTGATCCTTCTCCACGGCGTCCTTGATGTATGTGTCGATCAGCA 1006 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| || || ||||| || ||||| ||||| || | Sbjct 1007 GCGAGTACACCTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAG 1066 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTC--CGCTAGATTTTCGTTCACGATGCC 17370 | |||| | || || || | ||| |||| ||| || || |||||||||||||| Sbjct 1067 CCTCCGGCACCTGCACCTCATTGCTGAA--GTTCATCGCCAGGTTCTCGTTCACGATGCC 1124 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| || ||||| ||||||| | ||||| ||||| Sbjct 1125 GTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517509753497880