Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq382 199 5e-46 >seq382 Length=26401 Score = 199 bits (220), Expect = 5e-46 Identities = 405/590 (69%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || || |||||||| || | ||||| || || || || Sbjct 6110 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 6169 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 || | || || | | || || || | || | || |||| | |||||| || ||||| Sbjct 6170 GGTTTCAGCCCTGCCACTTGTGCCACTA-GTCGCGTGAGCAACGCGTAGCTTGCAATGTT 6228 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 || ||||| || || ||||| || ||||||||||||||| ||| || || | || || Sbjct 6229 AAACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCC 6288 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | ||||||||||||||||||| | | ||| || |||||||| ||||| | ||| || Sbjct 6289 GTCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATC 6348 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 || |||||||| || | | |||| || | | | |||||| | | || Sbjct 6349 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATG 6408 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 |||| || | ||||||||||| ||||| || |||||||| | || | |||| || Sbjct 6409 AATCACCTCAGTAAGCTGGTCCACTCCCTGTCCAGTGTAATCTG-CGTGCATGTCCGTGT 6467 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC-C 146100 || ||| || || || | ||||||||| |||||||| || || || || || || | Sbjct 6468 ACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTTCGC 6527 Query 146101 CTGTGCCCCAGCC-CGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 || | | || ||| | | || | ||||||||||| || |||||||||| | Sbjct 6528 GCGTCTGCAATCCTCGG--CTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGTG 6585 Query 146160 GACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCT 146218 | | || || || | ||| | | | |||| || ||||| ||||| ||||||| Sbjct 6586 AATGTCCTTCTGCTG-CAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCT 6644 Query 146219 CTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 | || || || | |||||| || | |||||| || ||||| |||||| Sbjct 6645 CCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAAC 6694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590035929805640