Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq391 403 2e-107 seq33 132 5e-26 seq738 131 2e-25 seq138 129 6e-25 seq41 98.7 1e-15 >seq391 Length=25901 Score = 403 bits (446), Expect = 2e-107 Identities = 602/846 (71%), Gaps = 14/846 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| |||||||||| | ||||| || || | | ||| |||||| |||||| Sbjct 1316 GAGAACCCAAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTAC 1257 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| ||||||||||||||||| | ||||||| |||||||| | ||| || Sbjct 1256 AAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAG 1197 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | | ||| |||||||||||| || |||||||||||||||||||| || ||| Sbjct 1196 GACTGGGGGAACCTGACCGACAACGAGCGTCACTTCATCAAGCACGTGCTGGCGTTCTTC 1137 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTTTCGCTCAGGAGGTGCA 116829 || ||||||||||||||||| |||||||| |||| ||| | ||| | |||||||| Sbjct 1136 GCTGCCAGCGACGGCATCGTGAACGAGAACCTGG-CGATGAACTTCAGCAATGAGGTGCA 1078 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| | ||||| || |||||||||||||| |||||||| || |||||| | |||||||| Sbjct 1077 GGTGCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGA 1018 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTT 116946 |||| ||| || |||||||| ||| | | | | |||| || | | || | Sbjct 1017 GGTGTACTCGCTGCTGATCGACACATACATCAAGGACGCCGTGGAGAAGGATCACC---T 961 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 | || |||||||||||||| |||||||| | |||||||| |||||||| || Sbjct 960 GCTGCGTGCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTG 901 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 | | | | | | | ||| | ||||||||| |||| ||||| ||||| ||||| Sbjct 900 GTGTGACCCTCGCGTGTCGTCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGG 841 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | | ||||| |||||| ||| | |||| || |||||||| || |||||||||||||| Sbjct 840 CATTTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCC 781 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || |||| ||| |||||||||||| | |||||||||| |||| ||||| || Sbjct 780 TGGTCTGAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGC 721 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTG---CAGCGACCGAGCGCGGCGCGCGTCAGGGAGAT 117243 || | ||| | | | |||||| ||| ||| | | | |||| | || | ||| Sbjct 720 GTGCCTCATGTACTCGAAGTTGGTGAACAAGCTGCCG-GAGAGCCGCGTG-CA-CGCGAT 664 Query 117244 CGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 ||| ||||| || | || ||||| ||| | | || | || || ||| || Sbjct 663 CGTGCGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGCT 604 Query 117304 GCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | | || | || | | |||| ||||||||||||||||| |||||| | ||| | Sbjct 603 GATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTT 544 Query 117364 GCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCT 117423 | | ||||| | ||||| ||||||| | |||||| | |||| ||| || | Sbjct 543 GTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACAT 484 Query 117424 CATCTC 117429 ||||| Sbjct 483 GATCTC 478 >seq33 Length=70540 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || ||| | ||||| || || ||||| | ||||| || | Sbjct 19593 AACATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCT 19534 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| || |||||||| | || Sbjct 19533 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGA 19475 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 19474 CCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 19415 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || ||||| || ||| ||||| || | || ||| Sbjct 19414 CAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 19363 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | ||||| || || ||||| | ||||| || | | Sbjct 19362 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 19303 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| || |||||||| | ||||| Sbjct 19302 GACTCGATCGACAACG-TGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCA 19244 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 19243 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19184 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || ||||| || ||| |||| Sbjct 19183 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 19148 >seq738 Length=22000 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || || || || || || ||||| || |||||||| | ||||| || |||| | Sbjct 12112 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGA-GCCATC 12170 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||||| | | | ||||| | ||||| | ||||| || |||||||| | ||||| Sbjct 12171 CGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCA 12230 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 12231 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 12290 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 12291 CATCCAGAAGG 12301 >seq138 Length=77892 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | |||||||| || ||||| | ||||| || | Sbjct 13193 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCG 13134 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | ||| | ||||||| ||||| || |||||||| | ||| Sbjct 13133 TCGGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGAC 13074 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | ||| ||||| ||||| || |||| ||||| || | ||||||| Sbjct 13073 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTAC 13014 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | ||||| || || ||| |||| || | || ||| Sbjct 13013 AACATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTGCGCGGTGGC 12963 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| || ||||| | ||||| || | | Sbjct 12962 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCG 12903 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | ||| | ||||||| ||||| || |||||||| | |||||| Sbjct 12902 GACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 12843 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || |||| ||||| || | |||||||||| Sbjct 12842 CAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 12783 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| || || ||| |||| Sbjct 12782 ATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCG 12748 >seq41 Length=66094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 28145 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 28204 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||||||||||| ||||||||| || ||| |||| || | Sbjct 28205 ACTCTTTCGGACTACAACATCCAGAAGGAAAGCACGCTGCACCTGGTGCTGCGTCTGCGT 28264 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 28265 GGTGGTGGC 28273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515183514630160