Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq369 152 1e-31 seq95 118 2e-21 seq391 98.7 2e-15 seq1148 95.1 3e-14 >seq369 Length=26862 Score = 152 bits (168), Expect = 1e-31 Identities = 852/1346 (63%), Gaps = 67/1346 (5%) Strand=Plus/Minus Query 248430 CAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAA 248489 |||||| || |||||| || | || |||||||| ||| |||||||||||| || Sbjct 6528 CAAGCGCGATGGGCGCTCTGAGGAAGTCAAGTTCGACAAGATCACGGCGCGCATCACCAA 6469 Query 248490 GCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTAT 248549 ||| || || || ||| | || ||| ||| || || ||| | ||||| || | Sbjct 6468 GCTGTGCTACGGACTGAACCCGGACTACGTGGACGCCGTCAAGATCTCGCAGAAGGTCGT 6409 Query 248550 TTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGC 248609 | ||||| ||| |||| ||||| ||| | || |||||| | || || |||||||| Sbjct 6408 GGCAGGCGTGTACCCCGGTGTAACCACGTCCGAGCTGGACGAGCTGGCCGCCGAGACGGC 6349 Query 248610 GGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCT 248668 |||||| | | ||| ||||| |||| ||| |||||| | | | |||||||| | Sbjct 6348 CGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCGCATCGCCGTGT 6290 Query 248669 CAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCT-------- 248720 | | || ||||| | ||||| || ||| || | ||| | | | | Sbjct 6289 CCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGTCTTCCACAAGA 6230 Query 248721 ACATGCCT------ATGGGAT----GG---------TCGCCGATGACGTCCACAC---CG 248758 ||| || | ||| || ||||||| ||||| || | || Sbjct 6229 ACACGCACGAGAAAACGGGCGCCGCGGCGCCGCTCATCGCCGACGACGTGTACGCGCTCG 6170 Query 248759 TCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGT 248818 | || ||| |||| | || ||| || || || | ||| | || || |||| Sbjct 6169 TGATGCAGCACAAGG---ACGAGCTGAACTCGGCCATCATCCACGACCGGGACTTTGAGT 6113 Query 248819 ACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGA 248878 |||| | ||| | ||||||||||| ||| || ||| || | | |||||| Sbjct 6112 ACGACTACTTCGGCTTCAAAACGCTCGAGCGGGGCTACCTCTTCCGCGTGAACGGCAAGG 6053 Query 248879 TCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA 248938 ||||||| || ||||| ||| | ||||| ||||| | || || |||||| | |||| Sbjct 6052 TCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACA 5993 Query 248939 TAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TGACACATGCCAC 248996 | || | || | |||||| ||| | | | || | || || || || Sbjct 5992 TCCAGGCGGCACTGCACACGTACGAGCTCATG--TCACAGATGTTCTTTACGCACGCGAC 5935 Query 248997 ACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTGCTTTCTTC 249052 || |||||||| |||||||| || |||| || |||| |||||||| || | Sbjct 5934 GCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCA----GCTGTCGTCGTGCTTCCTGC 5879 Query 249053 TTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGA 249112 | |||||||| |||||||| | || |||||||| |||||||| || ||| ||| | Sbjct 5878 TGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCA 5819 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || | || || || || || | | ||||||||| || | | | Sbjct 5818 TCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCT 5759 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTCGATGCTTTGAG 249231 ||||| || || || || ||| | || ||| | ||| | || | ||| | Sbjct 5758 ACATCCGCGGCACGAACGGA-TCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAC 5700 Query 249232 TCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTAT 249288 ||| || | | | |||||| ||| || || || || ||||||||||| || Sbjct 5699 GACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTAC 5640 Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348 |||| |||||||||||| | || ||||||||||| || ||||| |||| ||| Sbjct 5639 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAAC 5580 Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408 ||||| | ||||| ||| | || |||| ||||||||| |||| |||||||| Sbjct 5579 GAGCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 5520 Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATC 249468 ||||| |||| | ||| | |||| || | | || ||| ||||| | ||| | Sbjct 5519 CGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTAC 5460 Query 249469 GATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCATCG- 249526 || |||| ||| ||||| | || || |||| ||||| | || || Sbjct 5459 GAGTGCTGGGGCGACGAGTTCGA-GACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGC 5401 Query 249527 --GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGA 249581 ||||||| ||||| || | | || || || | | |||| | ||||| || Sbjct 5400 GCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TCCTGGACGCGCAGATTGA 5344 Query 249582 GACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGC 249640 |||||| | ||||| | || ||| ||| |||||| |||| |||| ||||| | | Sbjct 5343 GACAGGCGTGCCGT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGA 5285 Query 249641 ATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTCGTCCAAG 249699 | || || || |||||||| || | || ||| ||| | || | ||| |||| Sbjct 5284 ACCTCGGCACGATCCGCTCAAGCAACTTGTGCTGC-GAGATTATGGAGTACACGTCGCCC 5226 Query 249700 GAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| | || || ||||||||||| Sbjct 5225 GATGAGGTGGCGGTGTGCAACCTGGC 5200 >seq95 Length=77642 Score = 118 bits (130), Expect = 2e-21 Identities = 258/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || |||||||| ||| |||| || || || || ||||||||||| ||||| | || Sbjct 69337 CTGCCGCATTTGCTGTTCTACGGACCCCCAGGCACGGGCAAGACGTCTACCATTGTCGCC 69396 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAA---CATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || || || | ||| | || || |||||| Sbjct 69397 GTGGGGCGTCAGCTCTTCGGCCCGGATTTTCGCAAGAACGGCCGCTTCCTGGAACTGAAC 69456 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || || | Sbjct 69457 GCGTCCGATGACCGAGGCATTAAGGTGGTGCGAGAGAAGGTCAAGAGCTTCGCCCAG--G 69514 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 || || | | | | ||| || ||||||||| || | | ||||| |||||| Sbjct 69515 GCGCCATCAGCACTGTCAGTGGTCTG-CCTCCTTTCAAGATCATCGTGCTGGATGAGGCG 69573 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA-GACGCACTCCGT 254296 ||| ||||||||| ||||||||| || || || ||||| | |||||| ||| ||||| Sbjct 69574 GACTCCATGACGGGCGACGCGCAATCGGCACTGCGCCGCATGATGGAAGACT-ACTCCAA 69632 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTC 254356 || ||||| || ||||| | || ||||| ||| ||||| | || |||| || Sbjct 69633 GGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGCCGCATCATTGAGCCTGTGGCCTC 69692 Query 254357 TCGGTGCGCCAAGTTTCGATT 254377 || ||||||||||| || || Sbjct 69693 GCGATGCGCCAAGTTCCGCTT 69713 >seq391 Length=25901 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | |||||||| ||||||||||| ||||| || Sbjct 418 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGC 477 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | || | ||||| Sbjct 478 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCA-CCCAG 536 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTA 157398 | || || | | ||| ||||| |||| |||||| Sbjct 537 CGAGTACAACAGGCGGTCGGCCACGAACTCGATGTA 572 >seq1148 Length=10033 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| ||||| |||||||||||| | | Sbjct 3652 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGTGCA 3711 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||||||| ||| |||| | | ||||| | || ||||||||||| ||| | | Sbjct 3712 AACCGCGTGGTGGCCGAGAAGATCTCCATAGTGCGGCGCAGCGCCTGTTGAGCCGCGGCC 3771 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 3772 GTCATCGAGTCGGCCTCGTCCAGGATCACGATCTT 3806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073690168961088