Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq369 340 2e-88 seq138 145 7e-30 seq738 122 8e-23 seq33 122 8e-23 >seq369 Length=26862 Score = 340 bits (376), Expect = 2e-88 Identities = 1221/1892 (65%), Gaps = 39/1892 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || |||||||| Sbjct 4278 CTTGTCCACGGTGAACTGGATGGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 4337 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| ||||||| ||||| || || || |||||||| || | |||| Sbjct 4338 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTTACTGATCGTCGG 4397 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||| ||||| || | || || || || || | Sbjct 4398 GTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCCACGGTCCGCCGA 4457 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | || | | | |||||||| || ||||||||| | | ||| || Sbjct 4458 CAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCCTTGACCTG 4517 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 ||| || |||| | | |||| ||||| || | | |||| || | Sbjct 4518 GTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGGATCTGGTTGCGCAC 4577 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CTT 22463 | | |||| | || | || ||| ||||| | || | |||||| | | | Sbjct 4578 CTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCACGATCGT 4637 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||| ||| || | || |||||||| | ||| ||||| || || |||| |||| || | Sbjct 4638 GAA-CTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACT 4696 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| |||| |||||||| ||||| || || |||||||| |||| || ||||||| Sbjct 4697 CGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGT 4756 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA-- 22641 | | | ||||||||| | || ||||||| | ||||||||||| | |||| Sbjct 4757 TGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCAGTCCCACAAACCGGAAG 4816 Query 22642 -CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700 ||| ||||| | ||||||| ||| | || || | || || || || ||| | Sbjct 4817 ACGGGGTCAC---GCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAGCCCT 4873 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCG 22759 | |||| |||||||| || | ||| | || || | || ||||| | || Sbjct 4874 GGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGACGTCTCCATAGAAGCG 4932 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCGTACGG 22818 || || || ||||||||||| ||| |||| | ||| ||| ||| ||| ||| ||| Sbjct 4933 TAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG-GCTCTCGAACG- 4990 Query 22819 CATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 |||| ||| | | || || ||||| | |||||| || || ||||| | ||| |||| Sbjct 4991 CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGT 5050 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 || || ||| |||||| | || || | || ||| || | | Sbjct 5051 GGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTAT 5110 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG 22997 ||||||| | |||||| | || || | | ||| | | || || Sbjct 5111 TCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCC-- 5168 Query 22998 ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 || | || |||||||| || ||| | || || || ||||| || |||||||| || Sbjct 5169 ATCCTCCA-CAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGG 5227 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 ||||||||||| | ||| ||| || | ||||| | |||||||| | || Sbjct 5228 GCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCT 5287 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||| || || ||| || |||||||| |||||| ||||| ||| ||||| | Sbjct 5288 GCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAA 5347 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTG 23236 ||||| || | ||| || ||||| ||| |||| || | | || || | | Sbjct 5348 TCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTC 5407 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||| |||| |||||||| | ||||| || || || ||| | || | || ||| || Sbjct 5408 CCTCCTTC-TCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGT 5466 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTC 23353 ||||| | | | || || | || |||||| | | |||| || ||||| || Sbjct 5467 CCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTT---GCCATTCGCCTCCACGCGCTTC 5523 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || ||||| || | ||| |||||||| |||| ||||| ||||| | ||| || Sbjct 5524 ATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGCTCGTTA 5583 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 ||| ||||| || |||| || || |||||||| || ||||||||||| ||||| Sbjct 5584 CCGTGATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAG 5643 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||| |||| || | ||| |||||||| || || || || ||||||| |||| Sbjct 5644 ATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTG 5703 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | || || ||||| || | || |||||||| | ||| | || ||| | | | Sbjct 5704 AAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCG--TTCG--TGCCGCGGATGTA 5759 Query 23594 CCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATAT 23649 || || || || | |||||| | | || || |||||| || | || || || Sbjct 5760 GCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGAT 5819 Query 23650 CATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGAC 23709 |||||| || || || |||||||| |||||||| || ||| || | | || | Sbjct 5820 GCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAG 5879 Query 23710 CAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGC 23769 || ||| ||||| |||| |||| ||||| |||| || || || || | || Sbjct 5880 CAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGC 5939 Query 23770 GTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 |||||||||| | | ||||| || | |||||||| | || || | ||||| | Sbjct 5940 GTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTG 5999 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGAC 23886 ||| ||||| | || |||||||| ||||| | || || | || ||||| | Sbjct 6000 CTTGTGGATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTT--- 6056 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 |||||| | ||| || || || | | |||||| || || || ||||| || | Sbjct 6057 GCCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTC 6116 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || ||||| | |||||||| |||| Sbjct 6117 AAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 6148 >seq138 Length=77892 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| ||||| |||||||| | ||||| || ||||| Sbjct 12963 CATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTC 12904 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||||||| | ||||| ||||| Sbjct 12903 GGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCA 12844 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 12843 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 12784 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || ||||| || | || | ||||||| Sbjct 12783 CATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTACGTGGCGGTA 12734 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| |||||| |||| ||||| |||||||| | ||||| || ||| Sbjct 13193 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCG 13134 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||||||| | ||||| ||| Sbjct 13133 TCGGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGAC 13074 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||||||||| ||| | || ||| | || ||||||| || Sbjct 13073 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTAC 13014 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 13013 AACATCCAGAAGGAGTCAACGCTACACCTGGTGCT 12979 >seq738 Length=22000 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| || || || ||||| | ||||| || || Sbjct 12108 AATCATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCC 12167 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||||||| | || | ||||| |||| ||| ||||||||||||| | ||||| || Sbjct 12168 ATCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGA 12227 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| | || ||| Sbjct 12228 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 12267 >seq33 Length=70540 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| |||| || || |||||||| | ||||| || || Sbjct 19593 AACATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCT 19534 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||||||| | || || ||| Sbjct 19533 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGAC 19474 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 19473 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 19414 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 19413 AACATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 19379 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| || || |||||||| | ||||| || || || Sbjct 19363 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTC 19304 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||||||| | || || ||||| Sbjct 19303 GGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCA 19244 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 19243 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 19184 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 19183 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 19151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735525104720